Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0097 and Atu0098 overlap by 1 nucleotides Atu0098 and Atu0099 are separated by 15 nucleotides Atu0099 and Atu0100 are separated by 11 nucleotides Atu0100 and Atu0101 are separated by 150 nucleotides
Atu0097: Atu0097 - hypothetical protein, at 101,634 to 102,038
Atu0097
Atu0098: Atu0098 - mutT/nudix family protein, at 102,038 to 103,000
Atu0098
Atu0099: Atu0099 - prephenate dehydratase, at 103,016 to 103,879
Atu0099
Atu0100: Atu0100 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 103,891 to 104,646
Atu0100
Atu0101: Atu0101 - cytochrome c, at 104,797 to 105,375
Atu0101
Position (kb) 103
104 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 102.156 kb on - strand, within Atu0098 at 102.161 kb on + strand, within Atu0098 at 102.161 kb on + strand, within Atu0098 at 102.162 kb on + strand, within Atu0098 at 102.247 kb on + strand, within Atu0098 at 102.255 kb on + strand, within Atu0098 at 102.255 kb on + strand, within Atu0098 at 102.399 kb on - strand, within Atu0098 at 102.507 kb on + strand, within Atu0098 at 102.666 kb on + strand, within Atu0098 at 102.666 kb on + strand, within Atu0098 at 102.702 kb on + strand, within Atu0098 at 102.721 kb on - strand, within Atu0098 at 102.774 kb on - strand, within Atu0098 at 102.781 kb on + strand, within Atu0098 at 102.869 kb on - strand, within Atu0098 at 102.888 kb on + strand, within Atu0098 at 102.998 kb on - strand at 103.022 kb on - strand at 103.031 kb on - strand at 103.110 kb on + strand, within Atu0099 at 103.191 kb on - strand, within Atu0099 at 103.239 kb on + strand, within Atu0099 at 103.247 kb on - strand, within Atu0099 at 103.247 kb on - strand, within Atu0099 at 103.247 kb on - strand, within Atu0099 at 103.270 kb on - strand, within Atu0099 at 103.448 kb on - strand, within Atu0099 at 103.471 kb on + strand, within Atu0099 at 103.507 kb on + strand, within Atu0099 at 103.555 kb on + strand, within Atu0099 at 103.562 kb on + strand, within Atu0099 at 103.692 kb on + strand, within Atu0099 at 103.760 kb on - strand, within Atu0099 at 104.661 kb on - strand at 104.732 kb on - strand at 104.769 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 102,156 - Atu0098 0.12 +1.2 102,161 + Atu0098 0.13 +0.6 102,161 + Atu0098 0.13 -0.5 102,162 + Atu0098 0.13 +0.4 102,247 + Atu0098 0.22 +0.0 102,255 + Atu0098 0.23 -0.9 102,255 + Atu0098 0.23 -1.4 102,399 - Atu0098 0.37 +0.1 102,507 + Atu0098 0.49 +0.2 102,666 + Atu0098 0.65 +0.3 102,666 + Atu0098 0.65 -0.5 102,702 + Atu0098 0.69 +0.5 102,721 - Atu0098 0.71 +0.2 102,774 - Atu0098 0.76 -0.6 102,781 + Atu0098 0.77 -0.3 102,869 - Atu0098 0.86 +0.1 102,888 + Atu0098 0.88 -0.1 102,998 - +0.0 103,022 - -0.7 103,031 - +1.1 103,110 + Atu0099 0.11 -5.1 103,191 - Atu0099 0.20 -2.7 103,239 + Atu0099 0.26 -2.9 103,247 - Atu0099 0.27 -5.2 103,247 - Atu0099 0.27 -3.2 103,247 - Atu0099 0.27 -0.5 103,270 - Atu0099 0.29 -6.4 103,448 - Atu0099 0.50 -0.7 103,471 + Atu0099 0.53 -5.6 103,507 + Atu0099 0.57 -1.2 103,555 + Atu0099 0.62 -1.7 103,562 + Atu0099 0.63 -1.7 103,692 + Atu0099 0.78 -7.0 103,760 - Atu0099 0.86 -5.2 104,661 - -0.6 104,732 - -0.5 104,769 - +0.3
Or see this region's nucleotide sequence