Experiment: Xylitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0058 and Atu0059 are separated by 114 nucleotides Atu0059 and Atu0060 are separated by 238 nucleotides Atu0060 and Atu0061 are separated by 155 nucleotides Atu0061 and Atu0062 are separated by 49 nucleotides
Atu0058: Atu0058 - hypothetical protein, at 62,235 to 62,492
Atu0058
Atu0059: Atu0059 - 5S ribosomal RNA, at 62,607 to 62,725
Atu0059
Atu0060: Atu0060 - tRNA-Met, at 62,964 to 63,040
Atu0060
Atu0061: Atu0061 - ATP-dependent DNA helicase, at 63,196 to 65,004
Atu0061
Atu0062: Atu0062 - transcriptional regulator, ROK family, at 65,054 to 66,286
Atu0062
Position (kb) 63
64
65
66 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10
11
12 at 63.208 kb on + strand at 63.219 kb on + strand at 63.347 kb on + strand at 63.426 kb on + strand, within Atu0061 at 63.466 kb on - strand, within Atu0061 at 63.466 kb on - strand, within Atu0061 at 63.502 kb on - strand, within Atu0061 at 63.525 kb on + strand, within Atu0061 at 63.526 kb on + strand, within Atu0061 at 63.581 kb on + strand, within Atu0061 at 63.589 kb on - strand, within Atu0061 at 63.845 kb on - strand, within Atu0061 at 63.981 kb on + strand, within Atu0061 at 63.981 kb on + strand, within Atu0061 at 63.981 kb on + strand, within Atu0061 at 64.020 kb on - strand, within Atu0061 at 64.066 kb on + strand, within Atu0061 at 64.110 kb on + strand, within Atu0061 at 64.233 kb on + strand, within Atu0061 at 64.287 kb on + strand, within Atu0061 at 64.287 kb on + strand, within Atu0061 at 64.293 kb on - strand, within Atu0061 at 64.379 kb on + strand, within Atu0061 at 64.467 kb on + strand, within Atu0061 at 64.475 kb on - strand, within Atu0061 at 64.475 kb on - strand, within Atu0061 at 64.475 kb on - strand, within Atu0061 at 64.622 kb on - strand, within Atu0061 at 64.763 kb on - strand, within Atu0061 at 64.775 kb on - strand, within Atu0061 at 64.788 kb on + strand, within Atu0061 at 64.911 kb on - strand at 65.124 kb on - strand at 65.477 kb on + strand, within Atu0062 at 65.520 kb on - strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.609 kb on + strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.617 kb on - strand, within Atu0062 at 65.850 kb on + strand, within Atu0062 at 65.898 kb on + strand, within Atu0062 at 65.914 kb on + strand, within Atu0062
Per-strain Table
Position Strand Gene LocusTag Fraction Xylitol (C) remove 63,208 + -0.0 63,219 + +0.4 63,347 + -0.1 63,426 + Atu0061 0.13 -0.2 63,466 - Atu0061 0.15 +0.6 63,466 - Atu0061 0.15 -0.3 63,502 - Atu0061 0.17 +2.3 63,525 + Atu0061 0.18 -0.3 63,526 + Atu0061 0.18 +0.0 63,581 + Atu0061 0.21 +1.2 63,589 - Atu0061 0.22 -0.3 63,845 - Atu0061 0.36 +0.3 63,981 + Atu0061 0.43 -0.1 63,981 + Atu0061 0.43 +0.9 63,981 + Atu0061 0.43 +0.1 64,020 - Atu0061 0.46 +0.8 64,066 + Atu0061 0.48 -0.2 64,110 + Atu0061 0.51 -0.1 64,233 + Atu0061 0.57 +0.3 64,287 + Atu0061 0.60 +0.3 64,287 + Atu0061 0.60 -0.2 64,293 - Atu0061 0.61 +0.0 64,379 + Atu0061 0.65 -0.2 64,467 + Atu0061 0.70 +3.3 64,475 - Atu0061 0.71 +0.5 64,475 - Atu0061 0.71 -0.0 64,475 - Atu0061 0.71 +0.7 64,622 - Atu0061 0.79 +0.3 64,763 - Atu0061 0.87 +0.8 64,775 - Atu0061 0.87 -0.1 64,788 + Atu0061 0.88 -0.1 64,911 - +0.5 65,124 - +11.3 65,477 + Atu0062 0.34 +11.7 65,520 - Atu0062 0.38 +11.2 65,609 + Atu0062 0.45 +11.7 65,609 + Atu0062 0.45 +11.7 65,609 + Atu0062 0.45 +11.6 65,609 + Atu0062 0.45 +11.7 65,617 - Atu0062 0.46 +11.4 65,617 - Atu0062 0.46 +11.7 65,617 - Atu0062 0.46 +11.2 65,617 - Atu0062 0.46 +11.5 65,617 - Atu0062 0.46 +11.8 65,850 + Atu0062 0.65 +11.3 65,898 + Atu0062 0.68 +12.0 65,914 + Atu0062 0.70 +11.8
Or see this region's nucleotide sequence