Strain Fitness in Escherichia coli BW25113 around b3765

Experiment: Carbenicillin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.004 mg/ml
3,945,543	+	hdfR	b4480	0.47	-1.1
3,945,543	+	hdfR	b4480	0.47	+0.7
3,945,551	-	hdfR	b4480	0.48	-1.1
3,945,744	-	hdfR	b4480	0.71	-0.9
3,945,783	+	hdfR	b4480	0.75	-0.3
3,945,783	+	hdfR	b4480	0.75	-2.8
3,945,897	+	hdfR	b4480	0.89	-0.1
3,945,902	+	hdfR	b4480	0.89	-0.3
3,945,914	-				-0.7
3,946,030	-				-0.7
3,946,030	-				+0.9
3,946,045	+				-0.7
3,946,056	+				-1.3
3,946,058	+				-1.1
3,946,064	-				-0.7
3,946,071	+				+0.1
3,946,102	+				-0.7
3,946,102	+				-0.7
3,946,127	-				-1.2
3,946,176	-	yifE	b3764	0.20	-1.3
3,946,179	-	yifE	b3764	0.21	+0.1
3,946,200	+	yifE	b3764	0.27	-0.3
3,946,281	-	yifE	b3764	0.51	-1.3
3,946,281	-	yifE	b3764	0.51	-0.3
3,946,295	-	yifE	b3764	0.55	-0.8
3,946,309	+	yifE	b3764	0.59	-1.3
3,946,345	+	yifE	b3764	0.70	-0.3
3,946,360	+	yifE	b3764	0.74	-0.7
3,946,360	+	yifE	b3764	0.74	-0.7
3,946,366	-	yifE	b3764	0.76	-1.3
3,946,366	-	yifE	b3764	0.76	-1.3
3,946,525	+				-0.5
3,946,528	-				+2.3
3,946,528	-				+0.3
3,946,575	-				-0.3
3,946,575	-				+0.6
3,946,621	-				-1.2
3,946,621	-				-0.9
3,946,628	+	yifB	b3765	0.10	+0.2
3,946,632	+	yifB	b3765	0.11	-0.7
3,946,706	+	yifB	b3765	0.15	+0.1
3,946,761	+	yifB	b3765	0.19	+1.1
3,946,883	-	yifB	b3765	0.27	-1.0
3,946,903	-	yifB	b3765	0.28	+0.1
3,947,019	+	yifB	b3765	0.36	-0.3
3,947,019	+	yifB	b3765	0.36	-0.9
3,947,020	-	yifB	b3765	0.36	-1.8
3,947,047	+	yifB	b3765	0.38	+2.7
3,947,047	+	yifB	b3765	0.38	+0.1
3,947,065	-	yifB	b3765	0.39	-1.4
3,947,065	-	yifB	b3765	0.39	+0.1
3,947,070	-	yifB	b3765	0.39	-1.5
3,947,177	+	yifB	b3765	0.46	-0.2
3,947,178	-	yifB	b3765	0.46	+0.2
3,947,178	-	yifB	b3765	0.46	-1.5
3,947,180	+	yifB	b3765	0.47	-0.3
3,947,180	+	yifB	b3765	0.47	+0.0
3,947,195	-	yifB	b3765	0.48	-0.3
3,947,240	-	yifB	b3765	0.50	+0.5
3,947,251	-	yifB	b3765	0.51	-0.8
3,947,251	-	yifB	b3765	0.51	-0.2
3,947,269	-	yifB	b3765	0.52	-0.0
3,947,269	-	yifB	b3765	0.52	-0.0
3,947,339	-	yifB	b3765	0.57	-1.2
3,947,409	-	yifB	b3765	0.62	-0.5
3,947,423	-	yifB	b3765	0.63	-0.7
3,947,423	-	yifB	b3765	0.63	-0.4
3,947,423	-	yifB	b3765	0.63	-1.7
3,947,429	+	yifB	b3765	0.63	+0.5
3,947,429	+	yifB	b3765	0.63	-0.7
3,947,437	-	yifB	b3765	0.63	+0.4
3,947,449	-	yifB	b3765	0.64	-0.3
3,947,449	-	yifB	b3765	0.64	+0.5
3,947,479	-	yifB	b3765	0.66	+1.1
3,947,481	+	yifB	b3765	0.66	+0.3
3,947,506	-	yifB	b3765	0.68	-2.1
3,947,506	-	yifB	b3765	0.68	-0.1
3,947,523	+	yifB	b3765	0.69	+0.5
3,947,523	+	yifB	b3765	0.69	-1.9
3,947,532	-	yifB	b3765	0.70	-0.2
3,947,543	+	yifB	b3765	0.70	+0.5
3,947,543	+	yifB	b3765	0.70	-1.8
3,947,746	+	yifB	b3765	0.84	-0.5
3,947,833	-	yifB	b3765	0.89	-0.8
3,947,836	-	yifB	b3765	0.90	-1.8
3,947,841	+				+0.8
3,947,903	+				-0.0
3,947,903	+				+0.3
3,947,984	-				+0.7
3,948,303	+				+0.9
3,948,305	+				+0.3
3,948,364	+	ilvL	b3766	0.19	+0.7
3,948,375	+	ilvL	b3766	0.30	+1.1
3,948,383	-	ilvL	b3766	0.38	+1.1
3,948,410	+	ilvL	b3766	0.66	-0.4
3,948,410	+	ilvL	b3766	0.66	-0.9
3,948,410	+	ilvL	b3766	0.66	+1.3
3,948,531	-				+0.5
3,948,579	+				-0.5
3,948,580	+				+0.1
3,948,580	+				+0.7
3,948,604	+				-0.7
3,948,604	+				-0.1
3,948,620	+				-0.3
3,948,620	+				+1.4
3,948,624	+				+0.4
3,948,633	-				-0.3
3,948,633	-				-0.9
3,948,633	-				+0.3
3,948,682	+				+0.4
3,948,721	+				-0.9
3,948,726	+				+0.1
3,948,748	+	ilvG	b4488	0.10	+1.3
3,948,748	+	ilvG	b4488	0.10	-0.9
3,948,781	+	ilvG	b4488	0.12	+0.3
3,948,815	+	ilvG	b4488	0.14	+0.3
3,948,815	+	ilvG	b4488	0.14	+0.9
3,948,851	+	ilvG	b4488	0.16	+0.9
3,948,851	+	ilvG	b4488	0.16	+0.2
3,948,851	+	ilvG	b4488	0.16	-0.7
3,948,859	-	ilvG	b4488	0.17	-0.2
3,948,933	+	ilvG	b4488	0.21	+0.3
3,948,939	+	ilvG	b4488	0.22	+0.0
3,948,944	+	ilvG	b4488	0.22	-0.3
3,948,947	-	ilvG	b4488	0.22	+0.0
3,948,947	-	ilvG	b4488	0.22	-0.2
3,948,966	-	ilvG	b4488	0.23	+0.1