Strain Fitness in Escherichia coli BW25113 around b2818

Experiment: Carbenicillin 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb2817 and argA are separated by 231 nucleotidesargA and recD are separated by 61 nucleotides b2817: b2817 - putative amidase (VIMSS), at 2,945,779 to 2,947,032 b2817 b2818: argA - N-acetylglutamate synthase (NCBI), at 2,947,264 to 2,948,595 argA b2819: recD - exonuclease V (RecBCD complex), alpha chain (NCBI), at 2,948,657 to 2,950,483 recD Position (kb) 2947 2948 2949Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2946.267 kb on + strand, within b2817at 2946.309 kb on + strand, within b2817at 2946.334 kb on - strand, within b2817at 2946.542 kb on + strand, within b2817at 2946.607 kb on - strand, within b2817at 2946.610 kb on - strand, within b2817at 2946.610 kb on - strand, within b2817at 2946.857 kb on - strand, within b2817at 2947.024 kb on - strandat 2947.032 kb on + strandat 2947.273 kb on - strandat 2947.422 kb on + strand, within argAat 2947.436 kb on + strand, within argAat 2947.442 kb on - strand, within argAat 2947.514 kb on - strand, within argAat 2947.514 kb on - strand, within argAat 2947.517 kb on + strand, within argAat 2947.517 kb on + strand, within argAat 2947.584 kb on - strand, within argAat 2947.584 kb on - strand, within argAat 2947.611 kb on + strand, within argAat 2947.621 kb on + strand, within argAat 2947.631 kb on - strand, within argAat 2947.748 kb on + strand, within argAat 2947.766 kb on + strand, within argAat 2947.782 kb on - strand, within argAat 2947.782 kb on - strand, within argAat 2947.783 kb on + strand, within argAat 2948.091 kb on + strand, within argAat 2948.357 kb on + strand, within argAat 2948.415 kb on - strand, within argAat 2948.474 kb on + strandat 2948.480 kb on - strandat 2948.485 kb on + strandat 2948.493 kb on - strandat 2948.557 kb on - strandat 2948.584 kb on + strandat 2948.592 kb on - strandat 2948.592 kb on - strandat 2948.630 kb on - strandat 2948.689 kb on - strandat 2948.698 kb on + strandat 2948.711 kb on - strandat 2948.975 kb on + strand, within recDat 2948.983 kb on - strand, within recDat 2948.985 kb on + strand, within recDat 2948.988 kb on - strand, within recDat 2949.122 kb on + strand, within recDat 2949.124 kb on + strand, within recDat 2949.124 kb on + strand, within recDat 2949.159 kb on + strand, within recDat 2949.159 kb on + strand, within recDat 2949.559 kb on - strand, within recDat 2949.564 kb on - strand, within recD

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbenicillin 0.004 mg/ml
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2,946,267 + b2817 b2817 0.39 -0.6
2,946,309 + b2817 b2817 0.42 +0.7
2,946,334 - b2817 b2817 0.44 -1.0
2,946,542 + b2817 b2817 0.61 -0.4
2,946,607 - b2817 b2817 0.66 -0.8
2,946,610 - b2817 b2817 0.66 -0.5
2,946,610 - b2817 b2817 0.66 +0.2
2,946,857 - b2817 b2817 0.86 +2.6
2,947,024 - -0.0
2,947,032 + +1.6
2,947,273 - -2.1
2,947,422 + argA b2818 0.12 -0.5
2,947,436 + argA b2818 0.13 +0.4
2,947,442 - argA b2818 0.13 +0.4
2,947,514 - argA b2818 0.19 +0.4
2,947,514 - argA b2818 0.19 -0.1
2,947,517 + argA b2818 0.19 -1.9
2,947,517 + argA b2818 0.19 -0.6
2,947,584 - argA b2818 0.24 -0.8
2,947,584 - argA b2818 0.24 +0.2
2,947,611 + argA b2818 0.26 +0.2
2,947,621 + argA b2818 0.27 -0.6
2,947,631 - argA b2818 0.28 +0.2
2,947,748 + argA b2818 0.36 +0.4
2,947,766 + argA b2818 0.38 -0.3
2,947,782 - argA b2818 0.39 -0.3
2,947,782 - argA b2818 0.39 -0.2
2,947,783 + argA b2818 0.39 +0.4
2,948,091 + argA b2818 0.62 +0.8
2,948,357 + argA b2818 0.82 +1.6
2,948,415 - argA b2818 0.86 +0.0
2,948,474 + +1.0
2,948,480 - -0.7
2,948,485 + +1.6
2,948,493 - +0.6
2,948,557 - +0.8
2,948,584 + -0.7
2,948,592 - -3.0
2,948,592 - +0.8
2,948,630 - -0.2
2,948,689 - +1.0
2,948,698 + -0.8
2,948,711 - -0.5
2,948,975 + recD b2819 0.17 +1.0
2,948,983 - recD b2819 0.18 +0.8
2,948,985 + recD b2819 0.18 +0.0
2,948,988 - recD b2819 0.18 +2.0
2,949,122 + recD b2819 0.25 +0.0
2,949,124 + recD b2819 0.26 +1.0
2,949,124 + recD b2819 0.26 +0.6
2,949,159 + recD b2819 0.27 -0.5
2,949,159 + recD b2819 0.27 +0.5
2,949,559 - recD b2819 0.49 +0.8
2,949,564 - recD b2819 0.50 +1.0

Or see this region's nucleotide sequence