Strain Fitness in Escherichia coli BW25113 around b2407

Experiment: Carbenicillin 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbenicillin 0.004 mg/ml
2,521,099	-	xapB	b2406	0.28	-0.1
2,521,141	-	xapB	b2406	0.31	+0.8
2,521,141	-	xapB	b2406	0.31	+1.2
2,521,141	-	xapB	b2406	0.31	+0.3
2,521,141	-	xapB	b2406	0.31	+0.5
2,521,151	-	xapB	b2406	0.32	+0.6
2,521,303	-	xapB	b2406	0.44	-0.9
2,521,359	-	xapB	b2406	0.48	+0.5
2,521,359	-	xapB	b2406	0.48	+0.7
2,521,437	-	xapB	b2406	0.55	+0.3
2,521,549	+	xapB	b2406	0.63	+0.3
2,521,631	+	xapB	b2406	0.70	+0.9
2,521,631	+	xapB	b2406	0.70	+1.7
2,521,634	-	xapB	b2406	0.70	-0.3
2,521,645	-	xapB	b2406	0.71	+0.6
2,521,654	-	xapB	b2406	0.72	-1.0
2,521,654	-	xapB	b2406	0.72	+0.3
2,521,682	-	xapB	b2406	0.74	+0.3
2,521,694	-	xapB	b2406	0.75	+0.5
2,521,729	+	xapB	b2406	0.78	-0.2
2,521,737	-	xapB	b2406	0.78	+0.4
2,521,739	+	xapB	b2406	0.79	+0.3
2,521,782	-	xapB	b2406	0.82	+0.7
2,521,783	+	xapB	b2406	0.82	+0.6
2,521,783	+	xapB	b2406	0.82	+0.2
2,521,791	-	xapB	b2406	0.83	+0.3
2,521,800	+	xapB	b2406	0.83	-0.7
2,521,808	-	xapB	b2406	0.84	+2.1
2,521,833	+	xapB	b2406	0.86	+0.3
2,521,833	+	xapB	b2406	0.86	+0.2
2,521,881	-	xapB	b2406	0.90	-0.7
2,521,898	-				-0.4
2,521,913	+				+0.0
2,521,913	+				-1.1
2,521,913	+				+0.7
2,521,921	-				+0.9
2,521,921	-				+0.7
2,521,921	-				+0.0
2,521,923	+				-0.9
2,521,923	+				+1.0
2,521,930	+				+0.0
2,521,931	-				+0.9
2,521,983	-				+0.3
2,521,991	-				+0.1
2,521,991	-				+0.4
2,521,991	-				+0.4
2,521,991	-				-0.5
2,521,998	-				+1.9
2,521,998	-				+0.9
2,522,121	-				+1.9
2,522,121	-				+0.7
2,522,146	-				-0.8
2,522,166	+	xapA	b2407	0.12	-0.7
2,522,166	+	xapA	b2407	0.12	+1.3
2,522,248	+	xapA	b2407	0.22	-0.6
2,522,248	+	xapA	b2407	0.22	+1.2
2,522,248	-	xapA	b2407	0.22	+0.5
2,522,248	-	xapA	b2407	0.22	+0.4
2,522,254	+	xapA	b2407	0.22	+0.7
2,522,271	-	xapA	b2407	0.24	-0.1
2,522,397	+	xapA	b2407	0.40	-0.1
2,522,405	-	xapA	b2407	0.41	+0.9
2,522,405	-	xapA	b2407	0.41	+0.0
2,522,438	+	xapA	b2407	0.44	+0.4
2,522,490	+	xapA	b2407	0.51	+1.0
2,522,565	-	xapA	b2407	0.60	+0.0
2,522,565	-	xapA	b2407	0.60	+1.2
2,522,593	-	xapA	b2407	0.63	-0.5
2,522,593	-	xapA	b2407	0.63	-0.1
2,522,593	-	xapA	b2407	0.63	+0.7
2,522,608	+	xapA	b2407	0.65	-0.1
2,522,668	+	xapA	b2407	0.72	+0.2
2,522,675	-	xapA	b2407	0.73	-0.0
2,522,685	+	xapA	b2407	0.74	-0.3
2,522,685	+	xapA	b2407	0.74	+0.6
2,522,690	+	xapA	b2407	0.75	+0.3
2,522,690	+	xapA	b2407	0.75	+0.5
2,522,709	+	xapA	b2407	0.77	+0.1
2,522,736	-	xapA	b2407	0.80	+0.5
2,522,776	-	xapA	b2407	0.85	+1.5
2,522,961	+				+0.5
2,522,963	+				+1.1
2,523,039	+				+1.5
2,523,126	-				-0.7
2,523,126	-				+0.5
2,523,140	-				-0.0
2,523,188	-				-0.6
2,523,188	-				+1.2
2,523,191	-				+0.1
2,523,193	-				+0.3
2,523,193	-				+0.1
2,523,269	-	yfeN	b2408	0.16	+0.3
2,523,269	-	yfeN	b2408	0.16	+0.5
2,523,270	-	yfeN	b2408	0.16	-0.6
2,523,341	+	yfeN	b2408	0.25	-1.7
2,523,349	-	yfeN	b2408	0.26	+0.6
2,523,351	+	yfeN	b2408	0.26	+0.3
2,523,351	+	yfeN	b2408	0.26	+0.0
2,523,364	-	yfeN	b2408	0.28	-1.8
2,523,364	-	yfeN	b2408	0.28	-0.3
2,523,368	+	yfeN	b2408	0.29	+1.3
2,523,378	+	yfeN	b2408	0.30	+1.2
2,523,383	-	yfeN	b2408	0.31	+0.7
2,523,383	-	yfeN	b2408	0.31	+0.1
2,523,406	-	yfeN	b2408	0.34	-0.7
2,523,473	-	yfeN	b2408	0.42	+0.1
2,523,487	-	yfeN	b2408	0.44	-0.4
2,523,490	+	yfeN	b2408	0.45	+0.6
2,523,493	+	yfeN	b2408	0.45	+0.4
2,523,499	+	yfeN	b2408	0.46	-1.1
2,523,499	-	yfeN	b2408	0.46	-1.0
2,523,507	+	yfeN	b2408	0.47	+0.0
2,523,550	-	yfeN	b2408	0.52	-0.6
2,523,607	+	yfeN	b2408	0.60	-0.5
2,523,607	+	yfeN	b2408	0.60	+0.8
2,523,610	+	yfeN	b2408	0.60	+0.5
2,523,615	-	yfeN	b2408	0.61	+0.7
2,523,625	+	yfeN	b2408	0.62	+0.4
2,523,633	-	yfeN	b2408	0.63	+1.3
2,523,683	-	yfeN	b2408	0.70	-0.1
2,523,683	-	yfeN	b2408	0.70	-0.1
2,523,741	+	yfeN	b2408	0.77	+0.4
2,523,762	-	yfeN	b2408	0.80	+1.1
2,523,796	+	yfeN	b2408	0.85	+0.5
2,523,796	+	yfeN	b2408	0.85	+0.9
2,523,830	-	yfeN	b2408	0.89	-0.7
2,523,850	+				-0.9
2,523,884	+				-0.9
2,523,887	+				-1.1