Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3377

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3376 and PfGW456L13_3377 are separated by 147 nucleotidesPfGW456L13_3377 and PfGW456L13_3378 are separated by 457 nucleotides PfGW456L13_3376 - Universal stress protein family 7, at 3,789,433 to 3,790,296 _3376 PfGW456L13_3377 - FIG00955280: hypothetical protein, at 3,790,444 to 3,790,914 _3377 PfGW456L13_3378 - Aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99), at 3,791,372 to 3,793,972 _3378 Position (kb) 3790 3791Strain fitness (log2 ratio) -3 -2 -1 0 1at 3790.198 kb on - strand, within PfGW456L13_3376at 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.372 kb on + strandat 3790.373 kb on - strandat 3790.373 kb on - strandat 3790.373 kb on - strandat 3790.373 kb on - strandat 3790.373 kb on - strandat 3790.435 kb on - strandat 3790.435 kb on - strandat 3790.435 kb on - strandat 3790.482 kb on + strandat 3790.482 kb on + strandat 3790.483 kb on - strandat 3790.483 kb on - strandat 3790.484 kb on + strandat 3790.484 kb on + strandat 3790.484 kb on + strandat 3790.485 kb on - strandat 3790.493 kb on + strand, within PfGW456L13_3377at 3790.494 kb on - strand, within PfGW456L13_3377at 3790.914 kb on + strandat 3790.915 kb on - strandat 3790.915 kb on - strandat 3790.915 kb on - strandat 3790.915 kb on - strandat 3790.915 kb on - strandat 3790.915 kb on - strandat 3790.918 kb on + strandat 3790.919 kb on - strandat 3790.919 kb on - strandat 3791.053 kb on + strandat 3791.075 kb on + strandat 3791.230 kb on + strandat 3791.277 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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3,790,198 - PfGW456L13_3376 0.89 +0.2
3,790,372 + +0.4
3,790,372 + -0.7
3,790,372 + +0.1
3,790,372 + -0.2
3,790,372 + +1.2
3,790,372 + +0.1
3,790,372 + -1.3
3,790,372 + +0.0
3,790,372 + -1.2
3,790,372 + -0.6
3,790,372 + +0.8
3,790,373 - -0.7
3,790,373 - +1.2
3,790,373 - -2.6
3,790,373 - +0.0
3,790,373 - -0.8
3,790,435 - +0.0
3,790,435 - -0.3
3,790,435 - -1.7
3,790,482 + -0.6
3,790,482 + +0.3
3,790,483 - +0.8
3,790,483 - +0.9
3,790,484 + -0.1
3,790,484 + -1.1
3,790,484 + +0.1
3,790,485 - +0.8
3,790,493 + PfGW456L13_3377 0.10 -0.1
3,790,494 - PfGW456L13_3377 0.11 -0.5
3,790,914 + -1.8
3,790,915 - -1.1
3,790,915 - -0.0
3,790,915 - -1.9
3,790,915 - +0.4
3,790,915 - -1.4
3,790,915 - +0.6
3,790,918 + -1.6
3,790,919 - +0.9
3,790,919 - -2.8
3,791,053 + -0.8
3,791,075 + -0.6
3,791,230 + -0.6
3,791,277 + +0.8

Or see this region's nucleotide sequence