Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2174

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2173 and PfGW456L13_2174 are separated by 425 nucleotidesPfGW456L13_2174 and PfGW456L13_2175 are separated by 195 nucleotides PfGW456L13_2173 - Methylthioribose-1-phosphate isomerase (EC 5.3.1.23), at 2,378,368 to 2,379,444 _2173 PfGW456L13_2174 - DNA gyrase subunit A (EC 5.99.1.3), at 2,379,870 to 2,382,524 _2174 PfGW456L13_2175 - Phosphoserine aminotransferase (EC 2.6.1.52), at 2,382,720 to 2,383,811 _2175 Position (kb) 2379 2380 2381 2382 2383Strain fitness (log2 ratio) -1 0 1at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.953 kb on + strand, within PfGW456L13_2173at 2378.954 kb on - strand, within PfGW456L13_2173at 2379.060 kb on + strand, within PfGW456L13_2173at 2379.060 kb on + strand, within PfGW456L13_2173at 2379.060 kb on + strand, within PfGW456L13_2173at 2379.061 kb on - strand, within PfGW456L13_2173at 2379.061 kb on - strand, within PfGW456L13_2173at 2379.082 kb on - strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.148 kb on + strand, within PfGW456L13_2173at 2379.149 kb on - strand, within PfGW456L13_2173at 2379.149 kb on - strand, within PfGW456L13_2173at 2379.149 kb on - strand, within PfGW456L13_2173at 2379.429 kb on + strandat 2379.442 kb on + strandat 2379.442 kb on + strandat 2379.442 kb on + strandat 2379.442 kb on + strandat 2379.443 kb on - strandat 2379.443 kb on - strandat 2379.443 kb on - strandat 2379.443 kb on - strandat 2379.445 kb on + strandat 2379.445 kb on + strandat 2379.445 kb on + strandat 2379.445 kb on + strandat 2379.445 kb on + strandat 2379.445 kb on + strandat 2379.445 kb on + strandat 2379.445 kb on + strandat 2379.446 kb on - strandat 2379.446 kb on - strandat 2379.446 kb on - strandat 2379.446 kb on - strandat 2379.467 kb on - strandat 2379.507 kb on + strandat 2379.604 kb on + strandat 2379.605 kb on - strandat 2379.605 kb on - strandat 2379.605 kb on - strandat 2379.605 kb on - strandat 2379.605 kb on - strandat 2379.605 kb on - strandat 2379.644 kb on + strandat 2379.644 kb on + strandat 2379.644 kb on + strandat 2379.645 kb on - strandat 2379.645 kb on - strandat 2379.645 kb on - strandat 2379.645 kb on - strandat 2379.648 kb on + strandat 2379.648 kb on + strandat 2379.648 kb on + strandat 2379.648 kb on + strandat 2379.648 kb on + strandat 2379.649 kb on - strandat 2379.672 kb on + strandat 2379.695 kb on + strandat 2379.757 kb on + strandat 2379.757 kb on + strandat 2382.522 kb on + strandat 2382.522 kb on + strandat 2382.522 kb on + strandat 2382.522 kb on + strandat 2382.522 kb on + strandat 2382.582 kb on + strandat 2382.597 kb on + strandat 2382.691 kb on + strandat 2382.691 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,378,953 + PfGW456L13_2173 0.54 -0.1
2,378,953 + PfGW456L13_2173 0.54 -0.0
2,378,953 + PfGW456L13_2173 0.54 +1.0
2,378,953 + PfGW456L13_2173 0.54 -0.7
2,378,953 + PfGW456L13_2173 0.54 -0.4
2,378,953 + PfGW456L13_2173 0.54 -1.2
2,378,953 + PfGW456L13_2173 0.54 -0.4
2,378,954 - PfGW456L13_2173 0.54 -0.8
2,379,060 + PfGW456L13_2173 0.64 +0.0
2,379,060 + PfGW456L13_2173 0.64 +0.0
2,379,060 + PfGW456L13_2173 0.64 -0.6
2,379,061 - PfGW456L13_2173 0.64 +0.4
2,379,061 - PfGW456L13_2173 0.64 -0.1
2,379,082 - PfGW456L13_2173 0.66 -0.9
2,379,148 + PfGW456L13_2173 0.72 -0.7
2,379,148 + PfGW456L13_2173 0.72 -0.3
2,379,148 + PfGW456L13_2173 0.72 -0.3
2,379,148 + PfGW456L13_2173 0.72 +0.2
2,379,148 + PfGW456L13_2173 0.72 -1.4
2,379,148 + PfGW456L13_2173 0.72 -0.5
2,379,148 + PfGW456L13_2173 0.72 -0.4
2,379,148 + PfGW456L13_2173 0.72 -0.6
2,379,149 - PfGW456L13_2173 0.73 +0.7
2,379,149 - PfGW456L13_2173 0.73 +0.3
2,379,149 - PfGW456L13_2173 0.73 +0.7
2,379,429 + +0.1
2,379,442 + -0.2
2,379,442 + -1.0
2,379,442 + +0.5
2,379,442 + +0.0
2,379,443 - +0.2
2,379,443 - -0.3
2,379,443 - +0.1
2,379,443 - -1.5
2,379,445 + -0.2
2,379,445 + +1.1
2,379,445 + +0.2
2,379,445 + -0.1
2,379,445 + +0.4
2,379,445 + +0.6
2,379,445 + -0.6
2,379,445 + -1.5
2,379,446 - +0.5
2,379,446 - +0.3
2,379,446 - -0.1
2,379,446 - -1.2
2,379,467 - -0.2
2,379,507 + +0.3
2,379,604 + +0.2
2,379,605 - -0.2
2,379,605 - -0.1
2,379,605 - -0.7
2,379,605 - -0.3
2,379,605 - +0.4
2,379,605 - -0.4
2,379,644 + +0.4
2,379,644 + -0.9
2,379,644 + -0.2
2,379,645 - -1.0
2,379,645 - -0.7
2,379,645 - -0.3
2,379,645 - -0.3
2,379,648 + +0.7
2,379,648 + -1.1
2,379,648 + +0.4
2,379,648 + -0.5
2,379,648 + +0.2
2,379,649 - -1.6
2,379,672 + -0.5
2,379,695 + -0.6
2,379,757 + -0.1
2,379,757 + +0.3
2,382,522 + +0.4
2,382,522 + +0.5
2,382,522 + -0.3
2,382,522 + -1.0
2,382,522 + +0.8
2,382,582 + +1.0
2,382,597 + -0.1
2,382,691 + -0.5
2,382,691 + -0.5

Or see this region's nucleotide sequence