Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2173 and PfGW456L13_2174 are separated by 425 nucleotides PfGW456L13_2174 and PfGW456L13_2175 are separated by 195 nucleotides
PfGW456L13_2173 - Methylthioribose-1-phosphate isomerase (EC 5.3.1.23), at 2,378,368 to 2,379,444
_2173
PfGW456L13_2174 - DNA gyrase subunit A (EC 5.99.1.3), at 2,379,870 to 2,382,524
_2174
PfGW456L13_2175 - Phosphoserine aminotransferase (EC 2.6.1.52), at 2,382,720 to 2,383,811
_2175
Position (kb)
2379
2380
2381
2382
2383 Strain fitness (log2 ratio)
-1
0
1 at 2378.953 kb on + strand, within PfGW456L13_2173 at 2378.953 kb on + strand, within PfGW456L13_2173 at 2378.953 kb on + strand, within PfGW456L13_2173 at 2378.953 kb on + strand, within PfGW456L13_2173 at 2378.953 kb on + strand, within PfGW456L13_2173 at 2378.953 kb on + strand, within PfGW456L13_2173 at 2378.953 kb on + strand, within PfGW456L13_2173 at 2378.954 kb on - strand, within PfGW456L13_2173 at 2379.060 kb on + strand, within PfGW456L13_2173 at 2379.060 kb on + strand, within PfGW456L13_2173 at 2379.060 kb on + strand, within PfGW456L13_2173 at 2379.061 kb on - strand, within PfGW456L13_2173 at 2379.061 kb on - strand, within PfGW456L13_2173 at 2379.082 kb on - strand, within PfGW456L13_2173 at 2379.148 kb on + strand, within PfGW456L13_2173 at 2379.148 kb on + strand, within PfGW456L13_2173 at 2379.148 kb on + strand, within PfGW456L13_2173 at 2379.148 kb on + strand, within PfGW456L13_2173 at 2379.148 kb on + strand, within PfGW456L13_2173 at 2379.148 kb on + strand, within PfGW456L13_2173 at 2379.148 kb on + strand, within PfGW456L13_2173 at 2379.148 kb on + strand, within PfGW456L13_2173 at 2379.149 kb on - strand, within PfGW456L13_2173 at 2379.149 kb on - strand, within PfGW456L13_2173 at 2379.149 kb on - strand, within PfGW456L13_2173 at 2379.429 kb on + strand at 2379.442 kb on + strand at 2379.442 kb on + strand at 2379.442 kb on + strand at 2379.442 kb on + strand at 2379.443 kb on - strand at 2379.443 kb on - strand at 2379.443 kb on - strand at 2379.443 kb on - strand at 2379.445 kb on + strand at 2379.445 kb on + strand at 2379.445 kb on + strand at 2379.445 kb on + strand at 2379.445 kb on + strand at 2379.445 kb on + strand at 2379.445 kb on + strand at 2379.445 kb on + strand at 2379.446 kb on - strand at 2379.446 kb on - strand at 2379.446 kb on - strand at 2379.446 kb on - strand at 2379.467 kb on - strand at 2379.507 kb on + strand at 2379.604 kb on + strand at 2379.605 kb on - strand at 2379.605 kb on - strand at 2379.605 kb on - strand at 2379.605 kb on - strand at 2379.605 kb on - strand at 2379.605 kb on - strand at 2379.644 kb on + strand at 2379.644 kb on + strand at 2379.644 kb on + strand at 2379.645 kb on - strand at 2379.645 kb on - strand at 2379.645 kb on - strand at 2379.645 kb on - strand at 2379.648 kb on + strand at 2379.648 kb on + strand at 2379.648 kb on + strand at 2379.648 kb on + strand at 2379.648 kb on + strand at 2379.649 kb on - strand at 2379.672 kb on + strand at 2379.695 kb on + strand at 2379.757 kb on + strand at 2379.757 kb on + strand at 2382.522 kb on + strand at 2382.522 kb on + strand at 2382.522 kb on + strand at 2382.522 kb on + strand at 2382.522 kb on + strand at 2382.582 kb on + strand at 2382.597 kb on + strand at 2382.691 kb on + strand at 2382.691 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 2,378,953 + PfGW456L13_2173 0.54 -0.1 2,378,953 + PfGW456L13_2173 0.54 -0.0 2,378,953 + PfGW456L13_2173 0.54 +1.0 2,378,953 + PfGW456L13_2173 0.54 -0.7 2,378,953 + PfGW456L13_2173 0.54 -0.4 2,378,953 + PfGW456L13_2173 0.54 -1.2 2,378,953 + PfGW456L13_2173 0.54 -0.4 2,378,954 - PfGW456L13_2173 0.54 -0.8 2,379,060 + PfGW456L13_2173 0.64 +0.0 2,379,060 + PfGW456L13_2173 0.64 +0.0 2,379,060 + PfGW456L13_2173 0.64 -0.6 2,379,061 - PfGW456L13_2173 0.64 +0.4 2,379,061 - PfGW456L13_2173 0.64 -0.1 2,379,082 - PfGW456L13_2173 0.66 -0.9 2,379,148 + PfGW456L13_2173 0.72 -0.7 2,379,148 + PfGW456L13_2173 0.72 -0.3 2,379,148 + PfGW456L13_2173 0.72 -0.3 2,379,148 + PfGW456L13_2173 0.72 +0.2 2,379,148 + PfGW456L13_2173 0.72 -1.4 2,379,148 + PfGW456L13_2173 0.72 -0.5 2,379,148 + PfGW456L13_2173 0.72 -0.4 2,379,148 + PfGW456L13_2173 0.72 -0.6 2,379,149 - PfGW456L13_2173 0.73 +0.7 2,379,149 - PfGW456L13_2173 0.73 +0.3 2,379,149 - PfGW456L13_2173 0.73 +0.7 2,379,429 + +0.1 2,379,442 + -0.2 2,379,442 + -1.0 2,379,442 + +0.5 2,379,442 + +0.0 2,379,443 - +0.2 2,379,443 - -0.3 2,379,443 - +0.1 2,379,443 - -1.5 2,379,445 + -0.2 2,379,445 + +1.1 2,379,445 + +0.2 2,379,445 + -0.1 2,379,445 + +0.4 2,379,445 + +0.6 2,379,445 + -0.6 2,379,445 + -1.5 2,379,446 - +0.5 2,379,446 - +0.3 2,379,446 - -0.1 2,379,446 - -1.2 2,379,467 - -0.2 2,379,507 + +0.3 2,379,604 + +0.2 2,379,605 - -0.2 2,379,605 - -0.1 2,379,605 - -0.7 2,379,605 - -0.3 2,379,605 - +0.4 2,379,605 - -0.4 2,379,644 + +0.4 2,379,644 + -0.9 2,379,644 + -0.2 2,379,645 - -1.0 2,379,645 - -0.7 2,379,645 - -0.3 2,379,645 - -0.3 2,379,648 + +0.7 2,379,648 + -1.1 2,379,648 + +0.4 2,379,648 + -0.5 2,379,648 + +0.2 2,379,649 - -1.6 2,379,672 + -0.5 2,379,695 + -0.6 2,379,757 + -0.1 2,379,757 + +0.3 2,382,522 + +0.4 2,382,522 + +0.5 2,382,522 + -0.3 2,382,522 + -1.0 2,382,522 + +0.8 2,382,582 + +1.0 2,382,597 + -0.1 2,382,691 + -0.5 2,382,691 + -0.5
Or see this region's nucleotide sequence