Strain Fitness in Pseudomonas simiae WCS417 around PS417_27925

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_27920 and PS417_27925 overlap by 4 nucleotidesPS417_27925 and PS417_27930 are separated by 6 nucleotides PS417_27920: PS417_27920 - type VI secretion protein IcmF, at 6,020,004 to 6,023,504 _27920 PS417_27925: PS417_27925 - hypothetical protein, at 6,023,501 to 6,024,790 _27925 PS417_27930: PS417_27930 - type VI secretion protein, at 6,024,797 to 6,026,131 _27930 Position (kb) 6023 6024 6025Strain fitness (log2 ratio) -1 0 1at 6022.765 kb on + strand, within PS417_27920at 6022.766 kb on - strand, within PS417_27920at 6022.766 kb on - strand, within PS417_27920at 6023.134 kb on + strand, within PS417_27920at 6023.135 kb on - strand, within PS417_27920at 6023.135 kb on - strand, within PS417_27920at 6023.247 kb on - strandat 6023.799 kb on + strand, within PS417_27925at 6023.906 kb on - strand, within PS417_27925at 6024.295 kb on - strand, within PS417_27925at 6024.295 kb on - strand, within PS417_27925at 6024.313 kb on - strand, within PS417_27925at 6024.919 kb on - strandat 6024.919 kb on - strandat 6025.152 kb on + strand, within PS417_27930at 6025.575 kb on + strand, within PS417_27930at 6025.575 kb on + strand, within PS417_27930at 6025.576 kb on - strand, within PS417_27930at 6025.576 kb on - strand, within PS417_27930at 6025.590 kb on - strand, within PS417_27930at 6025.761 kb on + strand, within PS417_27930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
6,022,765 + PS417_27920 0.79 +0.4
6,022,766 - PS417_27920 0.79 +0.0
6,022,766 - PS417_27920 0.79 +0.0
6,023,134 + PS417_27920 0.89 +0.4
6,023,135 - PS417_27920 0.89 -0.7
6,023,135 - PS417_27920 0.89 +0.5
6,023,247 - +0.9
6,023,799 + PS417_27925 0.23 -0.5
6,023,906 - PS417_27925 0.31 -0.6
6,024,295 - PS417_27925 0.62 -1.2
6,024,295 - PS417_27925 0.62 -0.1
6,024,313 - PS417_27925 0.63 -0.7
6,024,919 - -0.5
6,024,919 - -0.1
6,025,152 + PS417_27930 0.27 +0.7
6,025,575 + PS417_27930 0.58 +0.7
6,025,575 + PS417_27930 0.58 -0.3
6,025,576 - PS417_27930 0.58 +0.2
6,025,576 - PS417_27930 0.58 -0.9
6,025,590 - PS417_27930 0.59 +1.4
6,025,761 + PS417_27930 0.72 -0.0

Or see this region's nucleotide sequence