Experiment: D-Glucuronic gamma lactone (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3262 and Atu3263 are separated by 55 nucleotides Atu3263 and Atu3264 are separated by 74 nucleotides Atu3264 and Atu3265 are separated by 6 nucleotides
Atu3262: Atu3262 - ABC transporter permease, at 280,319 to 282,154
Atu3262
Atu3263: Atu3263 - L-seryl-tRNA(Ser) selenium transferase, at 282,210 to 283,406
Atu3263
Atu3264: Atu3264 - IclR family transcriptional regulator, at 283,481 to 284,332
Atu3264
Atu3265: Atu3265 - hypothetical protein, at 284,339 to 284,821
Atu3265
Position (kb) 282
283
284 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.370 kb on + strand, within Atu3262 at 281.370 kb on + strand, within Atu3262 at 281.370 kb on + strand, within Atu3262 at 281.377 kb on - strand, within Atu3262 at 281.378 kb on - strand, within Atu3262 at 281.415 kb on + strand, within Atu3262 at 281.423 kb on - strand, within Atu3262 at 281.492 kb on + strand, within Atu3262 at 281.497 kb on + strand, within Atu3262 at 281.497 kb on + strand, within Atu3262 at 281.515 kb on - strand, within Atu3262 at 281.733 kb on + strand, within Atu3262 at 281.753 kb on - strand, within Atu3262 at 281.753 kb on - strand, within Atu3262 at 281.776 kb on - strand, within Atu3262 at 281.856 kb on + strand, within Atu3262 at 281.864 kb on - strand, within Atu3262 at 281.864 kb on - strand, within Atu3262 at 282.157 kb on - strand at 282.211 kb on - strand at 282.230 kb on - strand at 282.325 kb on - strand at 282.361 kb on - strand, within Atu3263 at 282.426 kb on + strand, within Atu3263 at 282.429 kb on - strand, within Atu3263 at 282.429 kb on - strand, within Atu3263 at 282.443 kb on + strand, within Atu3263 at 282.464 kb on - strand, within Atu3263 at 282.515 kb on + strand, within Atu3263 at 282.528 kb on - strand, within Atu3263 at 282.572 kb on + strand, within Atu3263 at 282.701 kb on + strand, within Atu3263 at 282.709 kb on - strand, within Atu3263 at 282.712 kb on + strand, within Atu3263 at 282.778 kb on + strand, within Atu3263 at 282.786 kb on - strand, within Atu3263 at 282.859 kb on + strand, within Atu3263 at 282.867 kb on - strand, within Atu3263 at 282.921 kb on + strand, within Atu3263 at 282.926 kb on + strand, within Atu3263 at 282.994 kb on - strand, within Atu3263 at 282.994 kb on - strand, within Atu3263 at 283.001 kb on + strand, within Atu3263 at 283.010 kb on + strand, within Atu3263 at 283.091 kb on - strand, within Atu3263 at 283.163 kb on + strand, within Atu3263 at 283.174 kb on - strand, within Atu3263 at 283.307 kb on - strand at 283.307 kb on - strand at 283.331 kb on - strand at 283.357 kb on + strand at 283.694 kb on + strand, within Atu3264 at 283.756 kb on + strand, within Atu3264 at 283.787 kb on + strand, within Atu3264 at 283.876 kb on + strand, within Atu3264 at 283.978 kb on - strand, within Atu3264 at 284.167 kb on + strand, within Atu3264 at 284.276 kb on - strand at 284.276 kb on - strand at 284.278 kb on + strand at 284.278 kb on + strand at 284.278 kb on + strand at 284.284 kb on + strand at 284.326 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucuronic gamma lactone (C) remove 281,370 + Atu3262 0.57 +0.5 281,370 + Atu3262 0.57 +0.0 281,370 + Atu3262 0.57 +0.1 281,377 - Atu3262 0.58 +1.6 281,378 - Atu3262 0.58 -1.3 281,415 + Atu3262 0.60 +0.1 281,423 - Atu3262 0.60 -0.0 281,492 + Atu3262 0.64 -0.1 281,497 + Atu3262 0.64 -0.1 281,497 + Atu3262 0.64 -0.0 281,515 - Atu3262 0.65 +0.3 281,733 + Atu3262 0.77 -0.0 281,753 - Atu3262 0.78 +0.3 281,753 - Atu3262 0.78 +0.0 281,776 - Atu3262 0.79 -0.4 281,856 + Atu3262 0.84 -0.1 281,864 - Atu3262 0.84 -0.2 281,864 - Atu3262 0.84 +0.0 282,157 - +1.1 282,211 - -0.3 282,230 - -1.5 282,325 - -0.6 282,361 - Atu3263 0.13 -1.2 282,426 + Atu3263 0.18 -0.2 282,429 - Atu3263 0.18 +0.2 282,429 - Atu3263 0.18 -0.0 282,443 + Atu3263 0.19 +0.3 282,464 - Atu3263 0.21 +0.5 282,515 + Atu3263 0.25 -0.3 282,528 - Atu3263 0.27 -0.7 282,572 + Atu3263 0.30 -0.0 282,701 + Atu3263 0.41 +0.1 282,709 - Atu3263 0.42 +0.1 282,712 + Atu3263 0.42 -0.0 282,778 + Atu3263 0.47 +1.0 282,786 - Atu3263 0.48 +0.1 282,859 + Atu3263 0.54 +0.1 282,867 - Atu3263 0.55 -0.3 282,921 + Atu3263 0.59 +0.2 282,926 + Atu3263 0.60 -0.8 282,994 - Atu3263 0.65 -0.2 282,994 - Atu3263 0.65 -0.0 283,001 + Atu3263 0.66 -0.2 283,010 + Atu3263 0.67 +0.0 283,091 - Atu3263 0.74 -0.1 283,163 + Atu3263 0.80 +0.6 283,174 - Atu3263 0.81 +1.8 283,307 - -0.1 283,307 - -0.0 283,331 - +0.4 283,357 + +0.0 283,694 + Atu3264 0.25 -0.4 283,756 + Atu3264 0.32 +0.2 283,787 + Atu3264 0.36 -0.3 283,876 + Atu3264 0.46 -0.6 283,978 - Atu3264 0.58 +0.1 284,167 + Atu3264 0.81 -2.3 284,276 - -0.2 284,276 - +0.1 284,278 + -0.1 284,278 + +0.3 284,278 + +0.7 284,284 + -0.8 284,326 + -0.5
Or see this region's nucleotide sequence