Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24355

Experiment: 150_an_nonmag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_3
2,042,253	+				-0.8
2,042,253	+				-0.5
2,042,253	+				-0.2
2,042,253	+				+0.2
2,042,253	+				+0.0
2,042,254	-				+0.5
2,042,254	-				-1.2
2,042,254	-				-0.1
2,042,335	-				-2.2
2,042,335	-				-0.6
2,042,335	-				+0.1
2,042,351	-				-0.4
2,042,351	-				-0.1
2,042,391	+				-0.9
2,042,442	+		AMB_RS09595	0.12	-0.6
2,042,442	+		AMB_RS09595	0.12	-2.5
2,042,443	-		AMB_RS09595	0.12	-1.4
2,042,443	-		AMB_RS09595	0.12	+0.2
2,042,443	-		AMB_RS09595	0.12	-0.4
2,042,443	-		AMB_RS09595	0.12	-1.6
2,042,481	+		AMB_RS09595	0.16	-2.2
2,042,481	+		AMB_RS09595	0.16	-0.6
2,042,484	-		AMB_RS09595	0.17	-1.4
2,042,607	+		AMB_RS09595	0.32	+0.1
2,042,607	+		AMB_RS09595	0.32	-0.1
2,042,607	+		AMB_RS09595	0.32	+0.4
2,042,607	+		AMB_RS09595	0.32	-1.6
2,042,608	-		AMB_RS09595	0.32	-0.9
2,042,608	-		AMB_RS09595	0.32	-0.1
2,042,608	-		AMB_RS09595	0.32	-2.8
2,042,640	+		AMB_RS09595	0.36	+0.0
2,042,640	+		AMB_RS09595	0.36	-0.2
2,042,640	+		AMB_RS09595	0.36	-0.5
2,042,640	+		AMB_RS09595	0.36	+0.4
2,042,641	-		AMB_RS09595	0.36	+0.8
2,042,641	-		AMB_RS09595	0.36	+0.4
2,042,641	-		AMB_RS09595	0.36	-0.9
2,042,641	-		AMB_RS09595	0.36	-0.5
2,042,641	-		AMB_RS09595	0.36	-1.5
2,042,646	+		AMB_RS09595	0.36	+0.5
2,042,646	+		AMB_RS09595	0.36	-0.6
2,042,646	+		AMB_RS09595	0.36	-0.6
2,042,647	-		AMB_RS09595	0.36	+0.3
2,042,647	-		AMB_RS09595	0.36	-0.6
2,042,647	-		AMB_RS09595	0.36	-0.9
2,042,647	-		AMB_RS09595	0.36	-0.9
2,043,219	-				-0.8
2,043,219	-				-1.9
2,043,314	+				-0.1
2,043,314	+				+0.8
2,043,314	+				-2.0
2,043,314	+				-0.2
2,043,314	+				-1.5
2,043,314	+				-1.4
2,043,314	+				-0.1
2,043,315	-				+0.1
2,043,315	-				-1.7
2,043,315	-				-1.8
2,043,315	-				-1.6
2,043,315	-				-0.2
2,043,315	-				-1.9
2,043,342	-				-0.7
2,043,342	-				-2.4
2,043,473	+				-4.3
2,043,473	+				+0.4
2,043,473	+				-1.2
2,043,474	-				-1.7
2,043,474	-				-0.2
2,043,474	-				+1.1
2,043,474	-				-0.3
2,043,494	+				+0.3
2,043,494	+				-0.4
2,043,503	+				+1.4
2,043,547	+		AMB_RS24355	0.11	-0.6
2,043,548	-		AMB_RS24355	0.11	-0.9
2,043,573	-		AMB_RS24355	0.11	-0.6
2,043,649	+		AMB_RS24355	0.14	-1.6
2,043,659	+		AMB_RS24355	0.14	-2.5
2,043,659	+		AMB_RS24355	0.14	+0.8
2,043,834	-		AMB_RS24355	0.19	+0.1
2,043,834	-		AMB_RS24355	0.19	-2.5
2,044,118	+		AMB_RS24355	0.27	-0.6
2,044,118	+		AMB_RS24355	0.27	-0.9
2,044,119	-		AMB_RS24355	0.28	+0.4
2,044,119	-		AMB_RS24355	0.28	-2.3
2,044,119	-		AMB_RS24355	0.28	-0.3
2,044,119	-		AMB_RS24355	0.28	-0.6
2,044,166	+		AMB_RS24355	0.29	-0.2
2,044,167	-		AMB_RS24355	0.29	-0.2
2,044,172	+		AMB_RS24355	0.29	-1.0
2,044,172	+		AMB_RS24355	0.29	-1.3
2,044,172	+		AMB_RS24355	0.29	-0.7
2,044,173	-		AMB_RS24355	0.29	-3.0
2,044,173	-		AMB_RS24355	0.29	-0.1
2,044,173	-		AMB_RS24355	0.29	-0.5
2,044,173	-		AMB_RS24355	0.29	+0.3
2,044,559	+		AMB_RS24355	0.40	-1.3
2,044,559	+		AMB_RS24355	0.40	-0.5
2,044,559	+		AMB_RS24355	0.40	+0.2
2,044,560	-		AMB_RS24355	0.41	-0.1
2,044,562	+		AMB_RS24355	0.41	-1.6
2,044,715	+		AMB_RS24355	0.45	-0.3
2,044,715	+		AMB_RS24355	0.45	-1.4
2,044,715	+		AMB_RS24355	0.45	-0.9
2,044,715	+		AMB_RS24355	0.45	-0.9
2,044,715	+		AMB_RS24355	0.45	-0.6
2,044,716	-		AMB_RS24355	0.45	-0.2
2,044,716	-		AMB_RS24355	0.45	-2.2
2,044,716	-		AMB_RS24355	0.45	-1.7
2,044,716	-		AMB_RS24355	0.45	-1.2
2,044,716	-		AMB_RS24355	0.45	-1.6
2,044,717	+		AMB_RS24355	0.45	+0.4
2,044,717	+		AMB_RS24355	0.45	+1.4
2,044,717	+		AMB_RS24355	0.45	+0.8
2,044,799	+		AMB_RS24355	0.48	-0.2
2,044,799	+		AMB_RS24355	0.48	-1.2
2,044,799	+		AMB_RS24355	0.48	+0.3
2,044,799	+		AMB_RS24355	0.48	-0.0
2,044,800	-		AMB_RS24355	0.48	-1.9
2,044,800	-		AMB_RS24355	0.48	+0.8
2,044,800	-		AMB_RS24355	0.48	-0.4
2,044,800	-		AMB_RS24355	0.48	+0.4
2,044,800	-		AMB_RS24355	0.48	-2.7
2,044,800	-		AMB_RS24355	0.48	-2.4
2,044,800	-		AMB_RS24355	0.48	-0.6
2,044,880	+		AMB_RS24355	0.50	-0.1
2,044,880	+		AMB_RS24355	0.50	+0.4
2,044,880	+		AMB_RS24355	0.50	-0.2
2,044,881	-		AMB_RS24355	0.50	-0.0
2,044,916	-		AMB_RS24355	0.51	+0.0
2,045,010	-		AMB_RS24355	0.54	-1.4
2,045,123	+		AMB_RS24355	0.57	-1.9
2,045,124	-		AMB_RS24355	0.57	-0.4
2,045,144	+		AMB_RS24355	0.58	-0.2
2,045,144	+		AMB_RS24355	0.58	+0.5
2,045,144	+		AMB_RS24355	0.58	+0.4
2,045,144	+		AMB_RS24355	0.58	-0.3
2,045,145	-		AMB_RS24355	0.58	-1.0
2,045,146	+		AMB_RS24355	0.58	+0.3
2,045,146	+		AMB_RS24355	0.58	-0.3
2,045,146	+		AMB_RS24355	0.58	+0.2
2,045,146	+		AMB_RS24355	0.58	-1.9
2,045,147	-		AMB_RS24355	0.58	-0.3
2,045,288	-		AMB_RS24355	0.62	-0.6
2,045,296	-		AMB_RS24355	0.62	-0.2
2,045,315	+		AMB_RS24355	0.63	+0.1
2,045,316	-		AMB_RS24355	0.63	-0.4
2,045,316	-		AMB_RS24355	0.63	+0.4
2,045,619	-		AMB_RS24355	0.72	+1.3
2,045,619	-		AMB_RS24355	0.72	+0.5
2,045,619	-		AMB_RS24355	0.72	-2.2
2,045,660	+		AMB_RS24355	0.73	-0.8
2,045,660	+		AMB_RS24355	0.73	-0.1
2,045,660	+		AMB_RS24355	0.73	-0.6
2,045,660	+		AMB_RS24355	0.73	-0.2
2,045,662	+		AMB_RS24355	0.73	+0.4
2,045,663	-		AMB_RS24355	0.73	-0.3
2,045,663	-		AMB_RS24355	0.73	-0.9
2,045,663	-		AMB_RS24355	0.73	-1.6
2,045,720	-		AMB_RS24355	0.75	+1.0
2,045,750	+		AMB_RS24355	0.76	-2.2
2,045,750	+		AMB_RS24355	0.76	-0.5
2,045,795	+		AMB_RS24355	0.77	-2.2
2,045,795	+		AMB_RS24355	0.77	+1.4
2,045,795	+		AMB_RS24355	0.77	+0.5
2,045,795	+		AMB_RS24355	0.77	+0.4
2,045,795	+		AMB_RS24355	0.77	-2.5
2,045,795	+		AMB_RS24355	0.77	-0.2
2,045,795	+		AMB_RS24355	0.77	-1.9
2,045,796	-		AMB_RS24355	0.77	-2.6
2,045,796	-		AMB_RS24355	0.77	-0.2
2,045,796	-		AMB_RS24355	0.77	-2.6
2,045,796	-		AMB_RS24355	0.77	+0.2
2,045,796	-		AMB_RS24355	0.77	-0.2
2,045,796	-		AMB_RS24355	0.77	+0.4
2,045,796	-		AMB_RS24355	0.77	-3.1
2,045,796	-		AMB_RS24355	0.77	+0.7
2,045,819	+		AMB_RS24355	0.78	+0.9
2,045,966	+		AMB_RS24355	0.82	-0.9
2,045,966	+		AMB_RS24355	0.82	-0.2
2,045,966	+		AMB_RS24355	0.82	-1.6
2,045,966	+		AMB_RS24355	0.82	-2.5
2,045,967	-		AMB_RS24355	0.82	-2.7
2,045,967	-		AMB_RS24355	0.82	-0.6
2,046,013	-		AMB_RS24355	0.83	+0.2
2,046,014	+		AMB_RS24355	0.83	-1.4
2,046,015	-		AMB_RS24355	0.83	-0.6
2,046,045	-		AMB_RS24355	0.84	-0.0
2,046,089	+		AMB_RS24355	0.86	-1.6
2,046,089	+		AMB_RS24355	0.86	-0.7
2,046,089	+		AMB_RS24355	0.86	-1.8
2,046,090	-		AMB_RS24355	0.86	-1.9
2,046,090	-		AMB_RS24355	0.86	-2.8
2,046,090	-		AMB_RS24355	0.86	+0.2
2,046,090	-		AMB_RS24355	0.86	-0.9
2,046,090	-		AMB_RS24355	0.86	-1.8
2,046,090	-		AMB_RS24355	0.86	-2.0
2,046,448	+				-0.0
2,046,448	+				-1.2
2,046,449	-				-0.2
2,046,449	-				-2.9
2,046,712	+		AMB_RS09605	0.21	-1.2
2,046,712	+		AMB_RS09605	0.21	-1.8
2,046,712	+		AMB_RS09605	0.21	-2.6
2,046,712	+		AMB_RS09605	0.21	+0.4
2,046,873	+		AMB_RS09605	0.47	+1.4
2,046,873	+		AMB_RS09605	0.47	-0.8
2,046,873	+		AMB_RS09605	0.47	-1.6
2,046,874	-		AMB_RS09605	0.47	-1.8
2,046,874	-		AMB_RS09605	0.47	-1.5
2,046,877	+		AMB_RS09605	0.48	-0.5
2,046,877	+		AMB_RS09605	0.48	+0.5
2,046,878	-		AMB_RS09605	0.48	-0.4
2,046,878	-		AMB_RS09605	0.48	-0.6
2,046,956	-		AMB_RS09605	0.61	-2.2
2,046,956	-		AMB_RS09605	0.61	+1.1
2,047,060	+		AMB_RS09605	0.77	-0.2
2,047,060	+		AMB_RS09605	0.77	-1.6
2,047,061	-		AMB_RS09605	0.77	+0.5
2,047,192	+				-2.3
2,047,193	-				-1.9
2,047,193	-				-0.1
2,047,338	+		AMB_RS09610	0.27	-0.6
2,047,487	+		AMB_RS09610	0.55	-0.4
2,047,488	-		AMB_RS09610	0.55	-0.9
2,047,488	-		AMB_RS09610	0.55	+0.6
2,047,488	-		AMB_RS09610	0.55	-0.7
2,047,488	-		AMB_RS09610	0.55	-1.2
2,047,488	-		AMB_RS09610	0.55	-2.0
2,047,506	+		AMB_RS09610	0.59	-1.2
2,047,507	-		AMB_RS09610	0.59	+0.3
2,047,565	+		AMB_RS09610	0.70	+0.2
2,047,566	-		AMB_RS09610	0.70	+0.2