Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS24240

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06745 and AMB_RS24240 are separated by 722 nucleotidesAMB_RS24240 and AMB_RS06755 are separated by 517 nucleotides AMB_RS06745: AMB_RS06745 - thymidylate synthase, at 1,446,472 to 1,447,266 _RS06745 AMB_RS24240: AMB_RS24240 - hypothetical protein, at 1,447,989 to 1,448,561 _RS24240 AMB_RS06755: AMB_RS06755 - hypothetical protein, at 1,449,079 to 1,449,558 _RS06755 Position (kb) 1447 1448 1449Strain fitness (log2 ratio) -3 -2 -1 0 1at 1447.303 kb on - strandat 1447.405 kb on + strandat 1447.405 kb on + strandat 1447.406 kb on - strandat 1447.450 kb on + strandat 1447.450 kb on + strandat 1447.503 kb on + strandat 1447.503 kb on + strandat 1447.638 kb on + strandat 1447.639 kb on - strandat 1447.680 kb on + strandat 1447.743 kb on + strandat 1447.744 kb on - strandat 1447.744 kb on - strandat 1447.819 kb on - strandat 1448.005 kb on - strandat 1448.005 kb on - strandat 1448.005 kb on - strandat 1448.005 kb on - strandat 1448.005 kb on - strandat 1448.206 kb on - strand, within AMB_RS24240at 1448.206 kb on - strand, within AMB_RS24240at 1448.206 kb on - strand, within AMB_RS24240at 1448.967 kb on + strandat 1448.967 kb on + strandat 1449.163 kb on + strand, within AMB_RS06755at 1449.164 kb on - strand, within AMB_RS06755at 1449.164 kb on - strand, within AMB_RS06755

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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1,447,303 - -0.4
1,447,405 + -0.6
1,447,405 + -0.0
1,447,406 - -0.9
1,447,450 + -0.3
1,447,450 + -1.5
1,447,503 + +0.7
1,447,503 + -0.5
1,447,638 + -2.2
1,447,639 - -1.1
1,447,680 + -0.4
1,447,743 + -1.2
1,447,744 - +0.5
1,447,744 - -0.9
1,447,819 - +1.5
1,448,005 - +0.1
1,448,005 - +0.5
1,448,005 - -1.5
1,448,005 - -1.3
1,448,005 - -1.7
1,448,206 - AMB_RS24240 0.38 -0.9
1,448,206 - AMB_RS24240 0.38 -3.3
1,448,206 - AMB_RS24240 0.38 -2.1
1,448,967 + -1.3
1,448,967 + -2.9
1,449,163 + AMB_RS06755 0.17 -0.2
1,449,164 - AMB_RS06755 0.18 +0.5
1,449,164 - AMB_RS06755 0.18 -0.9

Or see this region's nucleotide sequence