Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22980

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22970 and AMB_RS22975 are separated by 13 nucleotidesAMB_RS22975 and AMB_RS22980 are separated by 74 nucleotidesAMB_RS22980 and AMB_RS22985 overlap by 4 nucleotidesAMB_RS22985 and AMB_RS22990 are separated by 67 nucleotides AMB_RS22970: AMB_RS22970 - hypothetical protein, at 4,949,960 to 4,950,550 _RS22970 AMB_RS22975: AMB_RS22975 - hypothetical protein, at 4,950,564 to 4,951,307 _RS22975 AMB_RS22980: AMB_RS22980 - murein transglycosylase, at 4,951,382 to 4,952,545 _RS22980 AMB_RS22985: AMB_RS22985 - Tim44 domain-containing protein, at 4,952,542 to 4,953,201 _RS22985 AMB_RS22990: AMB_RS22990 - hypothetical protein, at 4,953,269 to 4,953,724 _RS22990 Position (kb) 4951 4952 4953Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4950.974 kb on - strand, within AMB_RS22975at 4950.974 kb on - strand, within AMB_RS22975at 4950.989 kb on - strand, within AMB_RS22975at 4951.024 kb on + strand, within AMB_RS22975at 4951.025 kb on - strand, within AMB_RS22975at 4951.025 kb on - strand, within AMB_RS22975at 4951.027 kb on + strand, within AMB_RS22975at 4951.027 kb on + strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.028 kb on - strand, within AMB_RS22975at 4951.203 kb on - strand, within AMB_RS22975at 4951.205 kb on - strand, within AMB_RS22975at 4951.383 kb on + strandat 4951.702 kb on - strand, within AMB_RS22980at 4951.708 kb on + strand, within AMB_RS22980at 4951.708 kb on + strand, within AMB_RS22980at 4951.709 kb on - strand, within AMB_RS22980at 4951.709 kb on - strand, within AMB_RS22980at 4951.709 kb on - strand, within AMB_RS22980at 4951.710 kb on + strand, within AMB_RS22980at 4951.711 kb on - strand, within AMB_RS22980at 4951.711 kb on - strand, within AMB_RS22980at 4951.711 kb on - strand, within AMB_RS22980at 4951.804 kb on + strand, within AMB_RS22980at 4951.804 kb on + strand, within AMB_RS22980at 4951.805 kb on - strand, within AMB_RS22980at 4952.010 kb on + strand, within AMB_RS22980at 4952.010 kb on + strand, within AMB_RS22980at 4952.010 kb on + strand, within AMB_RS22980at 4952.010 kb on + strand, within AMB_RS22980at 4952.011 kb on - strand, within AMB_RS22980at 4952.011 kb on - strand, within AMB_RS22980at 4952.013 kb on + strand, within AMB_RS22980at 4952.014 kb on - strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.109 kb on + strand, within AMB_RS22980at 4952.110 kb on - strand, within AMB_RS22980at 4952.110 kb on - strand, within AMB_RS22980at 4952.283 kb on + strand, within AMB_RS22980at 4952.284 kb on - strand, within AMB_RS22980at 4952.365 kb on + strand, within AMB_RS22980at 4952.366 kb on - strand, within AMB_RS22980at 4953.218 kb on - strandat 4953.218 kb on - strandat 4953.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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4,950,974 - AMB_RS22975 0.55 -1.1
4,950,974 - AMB_RS22975 0.55 -0.7
4,950,989 - AMB_RS22975 0.57 -0.6
4,951,024 + AMB_RS22975 0.62 -3.0
4,951,025 - AMB_RS22975 0.62 -1.1
4,951,025 - AMB_RS22975 0.62 +1.7
4,951,027 + AMB_RS22975 0.62 -1.0
4,951,027 + AMB_RS22975 0.62 -0.8
4,951,028 - AMB_RS22975 0.62 -2.0
4,951,028 - AMB_RS22975 0.62 +1.8
4,951,028 - AMB_RS22975 0.62 -0.3
4,951,028 - AMB_RS22975 0.62 +0.2
4,951,028 - AMB_RS22975 0.62 -0.6
4,951,028 - AMB_RS22975 0.62 +0.7
4,951,028 - AMB_RS22975 0.62 -0.1
4,951,203 - AMB_RS22975 0.86 -0.5
4,951,205 - AMB_RS22975 0.86 -0.8
4,951,383 + -0.4
4,951,702 - AMB_RS22980 0.27 -0.2
4,951,708 + AMB_RS22980 0.28 -0.1
4,951,708 + AMB_RS22980 0.28 -0.6
4,951,709 - AMB_RS22980 0.28 -1.9
4,951,709 - AMB_RS22980 0.28 +0.4
4,951,709 - AMB_RS22980 0.28 -0.6
4,951,710 + AMB_RS22980 0.28 +0.5
4,951,711 - AMB_RS22980 0.28 +0.5
4,951,711 - AMB_RS22980 0.28 +0.1
4,951,711 - AMB_RS22980 0.28 -0.1
4,951,804 + AMB_RS22980 0.36 -2.6
4,951,804 + AMB_RS22980 0.36 -1.3
4,951,805 - AMB_RS22980 0.36 -2.3
4,952,010 + AMB_RS22980 0.54 -0.0
4,952,010 + AMB_RS22980 0.54 -2.7
4,952,010 + AMB_RS22980 0.54 +0.0
4,952,010 + AMB_RS22980 0.54 -1.7
4,952,011 - AMB_RS22980 0.54 -2.5
4,952,011 - AMB_RS22980 0.54 -1.3
4,952,013 + AMB_RS22980 0.54 +0.4
4,952,014 - AMB_RS22980 0.54 -0.6
4,952,109 + AMB_RS22980 0.62 -0.5
4,952,109 + AMB_RS22980 0.62 -2.7
4,952,109 + AMB_RS22980 0.62 -0.0
4,952,109 + AMB_RS22980 0.62 -0.1
4,952,109 + AMB_RS22980 0.62 +1.0
4,952,110 - AMB_RS22980 0.63 -0.4
4,952,110 - AMB_RS22980 0.63 +0.1
4,952,283 + AMB_RS22980 0.77 -0.3
4,952,284 - AMB_RS22980 0.77 +1.4
4,952,365 + AMB_RS22980 0.84 -1.1
4,952,366 - AMB_RS22980 0.85 +0.2
4,953,218 - -0.5
4,953,218 - -0.3
4,953,218 - -1.2

Or see this region's nucleotide sequence