Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21895 and AMB_RS21900 overlap by 4 nucleotides AMB_RS21900 and AMB_RS21905 are separated by 167 nucleotides AMB_RS21905 and AMB_RS21910 are separated by 61 nucleotides
AMB_RS21895: AMB_RS21895 - hypothetical protein, at 4,734,665 to 4,735,768
_RS21895
AMB_RS21900: AMB_RS21900 - RNA 2',3'-cyclic phosphodiesterase, at 4,735,765 to 4,736,301
_RS21900
AMB_RS21905: AMB_RS21905 - hypothetical protein, at 4,736,469 to 4,737,038
_RS21905
AMB_RS21910: AMB_RS21910 - hypothetical protein, at 4,737,100 to 4,737,339
_RS21910
Position (kb) 4735
4736
4737 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4734.782 kb on + strand, within AMB_RS21895 at 4735.356 kb on - strand, within AMB_RS21895 at 4735.586 kb on + strand, within AMB_RS21895 at 4735.586 kb on + strand, within AMB_RS21895 at 4735.586 kb on + strand, within AMB_RS21895 at 4735.587 kb on - strand, within AMB_RS21895 at 4735.587 kb on - strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.613 kb on + strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.614 kb on - strand, within AMB_RS21895 at 4735.721 kb on + strand at 4735.722 kb on - strand at 4735.722 kb on - strand at 4736.269 kb on + strand at 4736.269 kb on + strand at 4736.269 kb on + strand at 4736.270 kb on - strand at 4736.270 kb on - strand at 4736.270 kb on - strand at 4736.270 kb on - strand at 4736.287 kb on + strand at 4736.289 kb on + strand at 4736.299 kb on + strand at 4736.743 kb on - strand, within AMB_RS21905 at 4736.743 kb on - strand, within AMB_RS21905 at 4736.773 kb on - strand, within AMB_RS21905 at 4736.773 kb on - strand, within AMB_RS21905 at 4736.789 kb on + strand, within AMB_RS21905 at 4736.790 kb on - strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.844 kb on + strand, within AMB_RS21905 at 4736.845 kb on - strand, within AMB_RS21905 at 4736.845 kb on - strand, within AMB_RS21905 at 4736.845 kb on - strand, within AMB_RS21905 at 4736.895 kb on + strand, within AMB_RS21905 at 4736.896 kb on - strand, within AMB_RS21905 at 4736.896 kb on - strand, within AMB_RS21905 at 4736.896 kb on - strand, within AMB_RS21905 at 4736.955 kb on + strand, within AMB_RS21905 at 4737.181 kb on + strand, within AMB_RS21910 at 4737.181 kb on + strand, within AMB_RS21910 at 4737.182 kb on - strand, within AMB_RS21910 at 4737.182 kb on - strand, within AMB_RS21910 at 4737.182 kb on - strand, within AMB_RS21910 at 4737.182 kb on - strand, within AMB_RS21910 at 4737.233 kb on + strand, within AMB_RS21910 at 4737.233 kb on + strand, within AMB_RS21910 at 4737.234 kb on - strand, within AMB_RS21910 at 4737.237 kb on - strand, within AMB_RS21910
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 4,734,782 + AMB_RS21895 0.11 -0.9 4,735,356 - AMB_RS21895 0.63 -0.6 4,735,586 + AMB_RS21895 0.83 +0.6 4,735,586 + AMB_RS21895 0.83 -1.8 4,735,586 + AMB_RS21895 0.83 +0.2 4,735,587 - AMB_RS21895 0.84 -0.3 4,735,587 - AMB_RS21895 0.84 +0.7 4,735,613 + AMB_RS21895 0.86 -1.7 4,735,613 + AMB_RS21895 0.86 +0.5 4,735,613 + AMB_RS21895 0.86 +1.0 4,735,613 + AMB_RS21895 0.86 -0.8 4,735,613 + AMB_RS21895 0.86 -2.3 4,735,613 + AMB_RS21895 0.86 -0.3 4,735,613 + AMB_RS21895 0.86 -0.3 4,735,614 - AMB_RS21895 0.86 +1.2 4,735,614 - AMB_RS21895 0.86 -1.1 4,735,614 - AMB_RS21895 0.86 +1.0 4,735,614 - AMB_RS21895 0.86 -1.4 4,735,614 - AMB_RS21895 0.86 -1.3 4,735,614 - AMB_RS21895 0.86 -1.1 4,735,614 - AMB_RS21895 0.86 +0.7 4,735,614 - AMB_RS21895 0.86 -1.6 4,735,721 + +0.2 4,735,722 - -0.1 4,735,722 - +0.9 4,736,269 + -0.3 4,736,269 + +0.3 4,736,269 + +0.8 4,736,270 - +1.7 4,736,270 - -0.3 4,736,270 - +1.7 4,736,270 - -4.4 4,736,287 + -1.1 4,736,289 + -0.3 4,736,299 + +0.1 4,736,743 - AMB_RS21905 0.48 -0.8 4,736,743 - AMB_RS21905 0.48 -0.3 4,736,773 - AMB_RS21905 0.53 +0.1 4,736,773 - AMB_RS21905 0.53 -0.9 4,736,789 + AMB_RS21905 0.56 -0.8 4,736,790 - AMB_RS21905 0.56 -0.6 4,736,844 + AMB_RS21905 0.66 +0.6 4,736,844 + AMB_RS21905 0.66 +0.1 4,736,844 + AMB_RS21905 0.66 +0.0 4,736,844 + AMB_RS21905 0.66 -0.9 4,736,844 + AMB_RS21905 0.66 -1.9 4,736,844 + AMB_RS21905 0.66 -0.0 4,736,844 + AMB_RS21905 0.66 -1.3 4,736,844 + AMB_RS21905 0.66 -3.9 4,736,845 - AMB_RS21905 0.66 -1.1 4,736,845 - AMB_RS21905 0.66 -0.6 4,736,845 - AMB_RS21905 0.66 +0.7 4,736,895 + AMB_RS21905 0.75 -0.3 4,736,896 - AMB_RS21905 0.75 +0.1 4,736,896 - AMB_RS21905 0.75 -0.9 4,736,896 - AMB_RS21905 0.75 -1.9 4,736,955 + AMB_RS21905 0.85 +0.0 4,737,181 + AMB_RS21910 0.34 +0.2 4,737,181 + AMB_RS21910 0.34 -1.6 4,737,182 - AMB_RS21910 0.34 -0.2 4,737,182 - AMB_RS21910 0.34 -0.7 4,737,182 - AMB_RS21910 0.34 +0.2 4,737,182 - AMB_RS21910 0.34 +0.2 4,737,233 + AMB_RS21910 0.55 -2.2 4,737,233 + AMB_RS21910 0.55 +0.0 4,737,234 - AMB_RS21910 0.56 +4.7 4,737,237 - AMB_RS21910 0.57 +0.0
Or see this region's nucleotide sequence