Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21440

Experiment: 150_an_nonmag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_3
4,647,245	+		AMB_RS21435	0.64	-0.6
4,647,245	+		AMB_RS21435	0.64	-3.2
4,647,245	+		AMB_RS21435	0.64	-2.4
4,647,245	+		AMB_RS21435	0.64	-1.4
4,647,245	+		AMB_RS21435	0.64	-1.5
4,647,245	+		AMB_RS21435	0.64	+0.1
4,647,245	+		AMB_RS21435	0.64	-0.6
4,647,245	+		AMB_RS21435	0.64	-2.0
4,647,246	-		AMB_RS21435	0.64	-2.9
4,647,246	-		AMB_RS21435	0.64	-2.8
4,647,246	-		AMB_RS21435	0.64	+0.7
4,647,246	-		AMB_RS21435	0.64	-2.7
4,647,246	-		AMB_RS21435	0.64	-2.6
4,647,246	-		AMB_RS21435	0.64	-2.6
4,647,314	+		AMB_RS21435	0.67	-1.6
4,647,362	+		AMB_RS21435	0.69	+0.7
4,647,363	-		AMB_RS21435	0.70	-2.0
4,647,363	-		AMB_RS21435	0.70	-2.9
4,647,363	-		AMB_RS21435	0.70	+0.1
4,647,363	-		AMB_RS21435	0.70	-2.1
4,647,363	-		AMB_RS21435	0.70	-0.3
4,647,363	-		AMB_RS21435	0.70	-0.6
4,647,363	-		AMB_RS21435	0.70	-3.3
4,647,407	+		AMB_RS21435	0.72	-2.3
4,647,407	+		AMB_RS21435	0.72	-0.6
4,647,408	-		AMB_RS21435	0.72	-0.9
4,647,408	-		AMB_RS21435	0.72	+1.7
4,647,408	-		AMB_RS21435	0.72	-0.9
4,647,408	-		AMB_RS21435	0.72	+0.7
4,647,408	-		AMB_RS21435	0.72	-3.3
4,647,408	-		AMB_RS21435	0.72	-4.2
4,647,408	-		AMB_RS21435	0.72	-0.3
4,647,408	-		AMB_RS21435	0.72	+1.7
4,647,408	-		AMB_RS21435	0.72	+0.1
4,647,413	+		AMB_RS21435	0.72	-3.0
4,647,413	+		AMB_RS21435	0.72	-0.6
4,647,413	+		AMB_RS21435	0.72	-0.2
4,647,413	+		AMB_RS21435	0.72	+0.1
4,647,413	+		AMB_RS21435	0.72	-2.2
4,647,413	+		AMB_RS21435	0.72	-1.9
4,647,413	+		AMB_RS21435	0.72	-3.8
4,647,413	+		AMB_RS21435	0.72	-2.4
4,647,413	+		AMB_RS21435	0.72	-0.6
4,647,413	+		AMB_RS21435	0.72	-1.4
4,647,413	+		AMB_RS21435	0.72	-2.9
4,647,413	+		AMB_RS21435	0.72	-5.2
4,647,413	+		AMB_RS21435	0.72	+0.1
4,647,413	+		AMB_RS21435	0.72	-1.6
4,647,413	+		AMB_RS21435	0.72	-3.2
4,647,413	+		AMB_RS21435	0.72	-2.0
4,647,413	+		AMB_RS21435	0.72	-3.6
4,647,413	+		AMB_RS21435	0.72	-1.6
4,647,413	+		AMB_RS21435	0.72	-0.9
4,647,413	+		AMB_RS21435	0.72	-1.1
4,647,413	+		AMB_RS21435	0.72	-3.0
4,647,413	+		AMB_RS21435	0.72	-0.3
4,647,414	+		AMB_RS21435	0.72	-0.3
4,647,414	-		AMB_RS21435	0.72	-2.6
4,647,414	-		AMB_RS21435	0.72	-2.5
4,647,414	-		AMB_RS21435	0.72	+0.7
4,647,414	-		AMB_RS21435	0.72	-3.9
4,647,414	-		AMB_RS21435	0.72	+1.7
4,647,414	-		AMB_RS21435	0.72	-3.1
4,647,414	-		AMB_RS21435	0.72	+1.7
4,647,414	-		AMB_RS21435	0.72	-3.4
4,647,414	-		AMB_RS21435	0.72	-1.4
4,647,414	-		AMB_RS21435	0.72	-0.2
4,647,414	-		AMB_RS21435	0.72	-1.3
4,647,414	-		AMB_RS21435	0.72	-0.6
4,647,414	-		AMB_RS21435	0.72	-0.3
4,647,414	-		AMB_RS21435	0.72	+0.1
4,647,507	+		AMB_RS21435	0.76	-0.6
4,647,507	+		AMB_RS21435	0.76	-2.1
4,647,507	+		AMB_RS21435	0.76	-4.9
4,647,508	-		AMB_RS21435	0.76	-1.1
4,647,508	-		AMB_RS21435	0.76	-1.8
4,647,508	-		AMB_RS21435	0.76	-2.3
4,647,508	-		AMB_RS21435	0.76	-0.9
4,647,508	-		AMB_RS21435	0.76	-0.3
4,647,509	+		AMB_RS21435	0.76	+1.7
4,647,509	+		AMB_RS21435	0.76	-2.2
4,647,509	+		AMB_RS21435	0.76	-1.1
4,647,509	+		AMB_RS21435	0.76	-0.3
4,647,509	+		AMB_RS21435	0.76	-0.9
4,647,509	+		AMB_RS21435	0.76	-0.9
4,647,509	+		AMB_RS21435	0.76	-3.9
4,647,509	+		AMB_RS21435	0.76	-0.9
4,647,509	+		AMB_RS21435	0.76	-0.9
4,647,510	-		AMB_RS21435	0.76	-4.6
4,647,510	-		AMB_RS21435	0.76	-3.1
4,647,510	-		AMB_RS21435	0.76	-6.0
4,647,510	-		AMB_RS21435	0.76	-3.8
4,647,597	+		AMB_RS21435	0.80	-1.9
4,647,597	+		AMB_RS21435	0.80	+0.1
4,647,597	+		AMB_RS21435	0.80	-2.2
4,647,598	-		AMB_RS21435	0.80	+0.1
4,647,598	-		AMB_RS21435	0.80	-0.6
4,647,598	-		AMB_RS21435	0.80	-3.1
4,647,668	+		AMB_RS21435	0.84	-1.1
4,647,668	+		AMB_RS21435	0.84	-2.1
4,647,668	+		AMB_RS21435	0.84	+0.1
4,647,669	-		AMB_RS21435	0.84	-3.2
4,647,669	-		AMB_RS21435	0.84	-2.0
4,647,737	+		AMB_RS21435	0.87	-3.7
4,647,738	-		AMB_RS21435	0.87	+1.7
4,647,776	+		AMB_RS21435	0.89	-2.2
4,647,776	+		AMB_RS21435	0.89	+0.7
4,647,776	+		AMB_RS21435	0.89	-1.8
4,647,806	+				+0.1
4,647,806	+				-2.0
4,647,806	+				+0.1
4,647,806	+				-0.9
4,647,806	+				+0.1
4,647,806	+				+0.1
4,647,806	+				-0.9
4,647,806	+				+0.7
4,647,806	+				-3.0
4,647,806	+				+0.1
4,647,806	+				-2.5
4,647,807	-				-1.7
4,647,807	-				-1.5
4,647,807	-				-3.6
4,647,807	-				+0.1
4,647,807	-				-1.1
4,647,807	-				-2.9
4,647,807	-				-1.1
4,647,807	-				-0.6
4,647,807	-				-3.0
4,647,807	-				-2.8
4,647,807	-				+0.7
4,647,807	-				-2.4
4,647,807	-				-0.3
4,647,893	+				-0.9
4,647,893	+				-2.5
4,647,893	+				-1.1
4,647,893	+				-1.5
4,647,894	-				+0.7
4,648,059	+				-0.3
4,648,060	-				-0.9
4,648,060	-				-1.2
4,648,060	-				-0.8
4,648,060	-				-0.3
4,648,060	-				+0.1
4,648,060	-				-1.4
4,648,060	-				-0.9
4,648,904	-		AMB_RS21445	0.10	-1.8
4,648,904	-		AMB_RS21445	0.10	+0.1
4,648,904	-		AMB_RS21445	0.10	-0.6
4,648,914	-		AMB_RS21445	0.11	+0.7
4,649,138	-		AMB_RS21445	0.22	-0.6
4,649,138	-		AMB_RS21445	0.22	-0.2
4,649,244	-		AMB_RS21445	0.28	+0.2
4,649,244	-		AMB_RS21445	0.28	-0.3
4,649,348	-		AMB_RS21445	0.33	-1.9
4,649,348	-		AMB_RS21445	0.33	-0.4
4,649,348	-		AMB_RS21445	0.33	-2.1
4,649,450	-		AMB_RS21445	0.38	-3.2
4,649,450	-		AMB_RS21445	0.38	-1.1
4,649,450	-		AMB_RS21445	0.38	+1.4
4,649,450	-		AMB_RS21445	0.38	+0.7
4,649,450	-		AMB_RS21445	0.38	-2.9
4,649,453	-		AMB_RS21445	0.38	-2.8
4,649,453	-		AMB_RS21445	0.38	-1.6
4,649,453	-		AMB_RS21445	0.38	-3.1
4,649,475	-		AMB_RS21445	0.39	-2.8
4,649,507	-		AMB_RS21445	0.41	+0.6
4,649,507	-		AMB_RS21445	0.41	-0.9
4,649,507	-		AMB_RS21445	0.41	-3.4
4,649,507	-		AMB_RS21445	0.41	-1.5
4,649,507	-		AMB_RS21445	0.41	-1.2
4,649,537	-		AMB_RS21445	0.42	-1.8
4,649,537	-		AMB_RS21445	0.42	-0.6
4,649,537	-		AMB_RS21445	0.42	+0.0
4,649,537	-		AMB_RS21445	0.42	-1.3
4,649,537	-		AMB_RS21445	0.42	-0.6
4,649,537	-		AMB_RS21445	0.42	-0.9
4,649,537	-		AMB_RS21445	0.42	-0.5
4,649,537	-		AMB_RS21445	0.42	-3.7
4,649,564	-		AMB_RS21445	0.44	-1.5
4,649,564	-		AMB_RS21445	0.44	-3.4