Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19205 and AMB_RS19210 are separated by 82 nucleotides AMB_RS19210 and AMB_RS19215 are separated by 119 nucleotides AMB_RS19215 and AMB_RS19220 are separated by 1 nucleotides AMB_RS19220 and AMB_RS19225 overlap by 4 nucleotides
AMB_RS19205: AMB_RS19205 - HAMP domain-containing protein, at 4,189,956 to 4,192,388
_RS19205
AMB_RS19210: AMB_RS19210 - hypothetical protein, at 4,192,471 to 4,192,677
_RS19210
AMB_RS19215: AMB_RS19215 - molybdenum cofactor biosynthesis protein MoaE, at 4,192,797 to 4,193,273
_RS19215
AMB_RS19220: AMB_RS19220 - molybdopterin converting factor subunit 1, at 4,193,275 to 4,193,526
_RS19220
AMB_RS19225: AMB_RS19225 - molybdopterin molybdenumtransferase MoeA, at 4,193,523 to 4,194,758
_RS19225
Position (kb) 4193
4194 Strain fitness (log2 ratio) -2
-1
0
1 at 4192.302 kb on + strand at 4192.303 kb on - strand at 4192.303 kb on - strand at 4192.303 kb on - strand at 4192.303 kb on - strand at 4192.328 kb on + strand at 4192.329 kb on - strand at 4192.329 kb on - strand at 4192.329 kb on - strand at 4192.329 kb on - strand at 4192.619 kb on + strand, within AMB_RS19210 at 4192.619 kb on + strand, within AMB_RS19210 at 4192.619 kb on + strand, within AMB_RS19210 at 4192.634 kb on + strand, within AMB_RS19210 at 4192.635 kb on - strand, within AMB_RS19210 at 4192.694 kb on - strand at 4192.737 kb on + strand at 4193.543 kb on - strand at 4193.543 kb on - strand at 4193.543 kb on - strand at 4194.126 kb on - strand, within AMB_RS19225 at 4194.396 kb on - strand, within AMB_RS19225
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 4,192,302 + -1.9 4,192,303 - -0.4 4,192,303 - +0.0 4,192,303 - -1.7 4,192,303 - +0.2 4,192,328 + -0.4 4,192,329 - -0.1 4,192,329 - +0.2 4,192,329 - +0.4 4,192,329 - -0.4 4,192,619 + AMB_RS19210 0.71 -1.4 4,192,619 + AMB_RS19210 0.71 -0.7 4,192,619 + AMB_RS19210 0.71 +0.2 4,192,634 + AMB_RS19210 0.79 -0.2 4,192,635 - AMB_RS19210 0.79 -0.7 4,192,694 - -1.4 4,192,737 + -1.9 4,193,543 - -1.4 4,193,543 - -2.4 4,193,543 - -0.2 4,194,126 - AMB_RS19225 0.49 -1.7 4,194,396 - AMB_RS19225 0.71 -1.4
Or see this region's nucleotide sequence