Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18660

Experiment: 150_an_nonmag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_3
4,053,283	+				-0.0
4,053,402	+				-0.7
4,053,402	+				-0.8
4,053,403	-				-1.8
4,053,403	-				-2.0
4,053,403	-				+0.3
4,053,541	-		AMB_RS18655	0.33	-1.6
4,053,646	-		AMB_RS18655	0.51	-1.8
4,053,757	+		AMB_RS18655	0.71	+0.5
4,053,757	+		AMB_RS18655	0.71	-0.8
4,053,757	+		AMB_RS18655	0.71	-1.2
4,053,762	-		AMB_RS18655	0.72	-0.4
4,053,762	-		AMB_RS18655	0.72	-0.5
4,053,769	+		AMB_RS18655	0.73	-1.2
4,053,839	-		AMB_RS18655	0.85	-0.6
4,053,941	+				-1.7
4,053,942	-				+0.1
4,053,942	-				-0.4
4,053,954	+				-0.4
4,053,954	+				-0.5
4,053,955	-				-0.5
4,053,960	+				-0.0
4,054,104	-				+0.5
4,054,108	-				-0.4
4,054,112	+				-3.0
4,054,162	-				-0.4
4,054,185	+				-4.8
4,054,186	-				-0.2
4,054,186	-				+0.1
4,054,445	+				-0.1
4,054,445	+				+0.2
4,054,445	+				-2.2
4,054,445	+				+0.3
4,054,445	+				-0.8
4,054,446	-				-0.4
4,054,446	-				-0.0
4,054,446	-				+0.6
4,054,446	-				-3.1
4,054,446	-				-0.2
4,054,446	-				-1.4
4,054,478	-				+0.0
4,054,531	+		AMB_RS18660	0.12	-1.6
4,054,532	-		AMB_RS18660	0.12	-0.4
4,054,532	-		AMB_RS18660	0.12	-0.2
4,054,532	-		AMB_RS18660	0.12	-0.8
4,054,550	+		AMB_RS18660	0.13	+0.1
4,054,550	+		AMB_RS18660	0.13	+1.1
4,054,551	-		AMB_RS18660	0.13	+0.2
4,054,580	+		AMB_RS18660	0.14	-0.5
4,054,580	+		AMB_RS18660	0.14	-0.0
4,054,580	+		AMB_RS18660	0.14	-1.8
4,054,580	+		AMB_RS18660	0.14	-0.1
4,054,581	-		AMB_RS18660	0.14	-0.8
4,054,581	-		AMB_RS18660	0.14	+0.3
4,054,610	-		AMB_RS18660	0.15	-0.1
4,054,778	+		AMB_RS18660	0.22	-1.2
4,054,855	+		AMB_RS18660	0.26	-0.4
4,054,855	+		AMB_RS18660	0.26	-0.8
4,054,855	+		AMB_RS18660	0.26	-0.3
4,054,856	-		AMB_RS18660	0.26	+1.6
4,054,856	-		AMB_RS18660	0.26	-0.4
4,054,920	+		AMB_RS18660	0.28	-0.0
4,054,920	+		AMB_RS18660	0.28	+1.2
4,054,921	-		AMB_RS18660	0.28	+0.2
4,054,921	-		AMB_RS18660	0.28	-1.0
4,055,048	+		AMB_RS18660	0.34	+0.2
4,055,048	+		AMB_RS18660	0.34	-0.4
4,055,048	+		AMB_RS18660	0.34	+1.1
4,055,048	+		AMB_RS18660	0.34	-1.2
4,055,098	-		AMB_RS18660	0.36	-1.2
4,055,252	+		AMB_RS18660	0.43	-0.8
4,055,252	+		AMB_RS18660	0.43	-1.6
4,055,252	+		AMB_RS18660	0.43	-0.4
4,055,252	+		AMB_RS18660	0.43	+0.6
4,055,252	+		AMB_RS18660	0.43	+0.4
4,055,252	+		AMB_RS18660	0.43	-0.4
4,055,252	+		AMB_RS18660	0.43	-0.8
4,055,253	-		AMB_RS18660	0.43	-0.4
4,055,253	-		AMB_RS18660	0.43	-1.4
4,055,253	-		AMB_RS18660	0.43	-2.1
4,055,253	-		AMB_RS18660	0.43	-1.0
4,055,253	-		AMB_RS18660	0.43	-0.6
4,055,253	-		AMB_RS18660	0.43	-0.4
4,055,253	-		AMB_RS18660	0.43	-0.6
4,055,301	+		AMB_RS18660	0.45	+0.4
4,055,301	+		AMB_RS18660	0.45	+0.1
4,055,301	+		AMB_RS18660	0.45	-0.0
4,055,301	+		AMB_RS18660	0.45	-0.4
4,055,301	+		AMB_RS18660	0.45	-0.8
4,055,302	-		AMB_RS18660	0.45	-0.4
4,055,302	-		AMB_RS18660	0.45	-0.8
4,055,312	-		AMB_RS18660	0.45	-0.8
4,055,318	+		AMB_RS18660	0.46	-2.3
4,055,351	+		AMB_RS18660	0.47	-0.8
4,055,352	-		AMB_RS18660	0.47	-0.1
4,055,352	-		AMB_RS18660	0.47	-0.0
4,055,474	-		AMB_RS18660	0.52	-1.4
4,055,474	-		AMB_RS18660	0.52	+0.7
4,055,474	-		AMB_RS18660	0.52	+0.4
4,055,488	+		AMB_RS18660	0.53	-0.0
4,055,531	+		AMB_RS18660	0.55	-0.0
4,055,531	+		AMB_RS18660	0.55	-3.0
4,055,550	+		AMB_RS18660	0.56	+0.3
4,055,550	+		AMB_RS18660	0.56	-0.1
4,055,550	+		AMB_RS18660	0.56	-0.3
4,055,551	-		AMB_RS18660	0.56	+0.9
4,055,551	-		AMB_RS18660	0.56	-0.1
4,055,551	-		AMB_RS18660	0.56	+1.6
4,055,599	+		AMB_RS18660	0.58	-0.1
4,055,599	+		AMB_RS18660	0.58	+0.2
4,055,600	-		AMB_RS18660	0.58	+0.6
4,055,618	-		AMB_RS18660	0.58	+1.3
4,055,618	-		AMB_RS18660	0.58	+0.4
4,055,618	-		AMB_RS18660	0.58	-0.4
4,055,618	-		AMB_RS18660	0.58	+0.6
4,055,618	-		AMB_RS18660	0.58	+1.0
4,055,749	-		AMB_RS18660	0.64	-1.8
4,055,749	-		AMB_RS18660	0.64	-1.0
4,055,750	+		AMB_RS18660	0.64	-0.7
4,055,751	-		AMB_RS18660	0.64	-1.4
4,055,817	+		AMB_RS18660	0.67	+0.6
4,055,817	+		AMB_RS18660	0.67	+0.1
4,055,817	+		AMB_RS18660	0.67	-0.0
4,055,818	-		AMB_RS18660	0.67	+0.4
4,055,993	-		AMB_RS18660	0.75	-2.7
4,056,005	-		AMB_RS18660	0.75	-0.0
4,056,005	-		AMB_RS18660	0.75	+0.2
4,056,005	-		AMB_RS18660	0.75	-1.8
4,056,096	+		AMB_RS18660	0.79	-0.2
4,056,096	+		AMB_RS18660	0.79	-2.3
4,056,096	+		AMB_RS18660	0.79	-1.9
4,056,097	-		AMB_RS18660	0.79	-0.5
4,056,097	-		AMB_RS18660	0.79	-1.0
4,056,097	-		AMB_RS18660	0.79	-0.3
4,056,097	-		AMB_RS18660	0.79	-0.8
4,056,097	-		AMB_RS18660	0.79	-0.4
4,056,097	-		AMB_RS18660	0.79	-2.8
4,056,132	-		AMB_RS18660	0.81	-0.9
4,056,190	+		AMB_RS18660	0.83	-1.0
4,056,191	-		AMB_RS18660	0.83	-0.4
4,056,306	+		AMB_RS18660	0.88	-3.7
4,056,307	-		AMB_RS18660	0.88	-0.4
4,056,413	-				+0.4
4,056,413	-				-0.7
4,056,414	+				+0.1
4,056,414	+				+1.0
4,056,414	+				-3.0
4,056,415	-				-0.0
4,056,415	-				-0.8
4,056,415	-				-0.5
4,056,415	-				+0.6
4,056,415	-				-0.4
4,056,415	-				+0.2
4,056,415	-				-0.0
4,056,466	+				-0.4
4,056,490	+				-0.3
4,056,490	+				-0.0
4,056,491	-				+0.6
4,056,517	-				-1.4
4,056,517	-				-2.4
4,056,603	-				+0.1
4,056,633	+				-0.8
4,056,675	+				-1.2
4,056,675	+				-0.5
4,056,675	+				-0.8
4,056,676	-				-0.4
4,056,676	-				-0.0
4,056,679	+				-0.1
4,056,679	+				-1.4
4,056,679	+				-1.2
4,056,680	-				-1.2
4,056,680	-				+0.1
4,056,680	-				-0.0
4,056,698	+				+1.6
4,056,698	+				-1.2
4,056,699	-				-0.5
4,056,699	-				+0.3
4,056,836	+				-0.4
4,056,836	+				-3.4
4,056,836	+				-0.1
4,056,836	+				-1.6
4,056,837	-				-0.4
4,056,936	+		AMB_RS18665	0.12	-1.2
4,056,936	+		AMB_RS18665	0.12	-0.1
4,056,936	+		AMB_RS18665	0.12	-0.0
4,056,937	-		AMB_RS18665	0.12	-1.2
4,056,982	+		AMB_RS18665	0.15	-0.8
4,056,983	-		AMB_RS18665	0.15	-0.4
4,057,001	+		AMB_RS18665	0.16	-1.4
4,057,001	+		AMB_RS18665	0.16	-1.4
4,057,002	-		AMB_RS18665	0.16	-3.2
4,057,059	+		AMB_RS18665	0.20	-1.2
4,057,059	+		AMB_RS18665	0.20	-0.2
4,057,059	+		AMB_RS18665	0.20	-0.4
4,057,059	+		AMB_RS18665	0.20	-1.0
4,057,059	+		AMB_RS18665	0.20	-1.8
4,057,059	+		AMB_RS18665	0.20	-1.6
4,057,059	+		AMB_RS18665	0.20	+0.1
4,057,060	-		AMB_RS18665	0.20	+0.3
4,057,553	+		AMB_RS18665	0.50	-0.1