Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS18615

Experiment: 150_an_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS18610 and AMB_RS18615 overlap by 10 nucleotidesAMB_RS18615 and AMB_RS18620 are separated by 15 nucleotides AMB_RS18610: AMB_RS18610 - NACHT domain-containing protein, at 4,040,796 to 4,042,352 _RS18610 AMB_RS18615: AMB_RS18615 - hypothetical protein, at 4,042,343 to 4,044,136 _RS18615 AMB_RS18620: AMB_RS18620 - AmmeMemoRadiSam system radical SAM enzyme, at 4,044,152 to 4,045,360 _RS18620 Position (kb) 4042 4043 4044 4045Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4041.408 kb on + strand, within AMB_RS18610at 4041.504 kb on + strand, within AMB_RS18610at 4041.504 kb on + strand, within AMB_RS18610at 4041.505 kb on + strand, within AMB_RS18610at 4041.505 kb on - strand, within AMB_RS18610at 4041.505 kb on - strand, within AMB_RS18610at 4041.505 kb on - strand, within AMB_RS18610at 4041.505 kb on - strand, within AMB_RS18610at 4041.505 kb on - strand, within AMB_RS18610at 4041.505 kb on - strand, within AMB_RS18610at 4041.702 kb on + strand, within AMB_RS18610at 4041.702 kb on + strand, within AMB_RS18610at 4041.702 kb on + strand, within AMB_RS18610at 4041.702 kb on + strand, within AMB_RS18610at 4041.702 kb on + strand, within AMB_RS18610at 4041.702 kb on + strand, within AMB_RS18610at 4041.702 kb on + strand, within AMB_RS18610at 4041.702 kb on + strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.703 kb on - strand, within AMB_RS18610at 4041.708 kb on + strand, within AMB_RS18610at 4041.709 kb on - strand, within AMB_RS18610at 4042.385 kb on + strandat 4042.385 kb on + strandat 4042.580 kb on + strand, within AMB_RS18615at 4042.580 kb on + strand, within AMB_RS18615at 4042.580 kb on + strand, within AMB_RS18615at 4042.580 kb on + strand, within AMB_RS18615at 4042.580 kb on + strand, within AMB_RS18615at 4042.581 kb on - strand, within AMB_RS18615at 4042.581 kb on - strand, within AMB_RS18615at 4042.581 kb on - strand, within AMB_RS18615at 4042.581 kb on - strand, within AMB_RS18615at 4042.581 kb on - strand, within AMB_RS18615at 4042.727 kb on - strand, within AMB_RS18615at 4043.055 kb on + strand, within AMB_RS18615at 4043.055 kb on + strand, within AMB_RS18615at 4043.090 kb on + strand, within AMB_RS18615at 4043.091 kb on - strand, within AMB_RS18615at 4043.265 kb on + strand, within AMB_RS18615at 4043.265 kb on + strand, within AMB_RS18615at 4043.265 kb on + strand, within AMB_RS18615at 4043.265 kb on + strand, within AMB_RS18615at 4043.265 kb on + strand, within AMB_RS18615at 4043.266 kb on - strand, within AMB_RS18615at 4043.266 kb on - strand, within AMB_RS18615at 4043.266 kb on - strand, within AMB_RS18615at 4043.266 kb on - strand, within AMB_RS18615at 4043.266 kb on - strand, within AMB_RS18615at 4043.266 kb on - strand, within AMB_RS18615at 4043.269 kb on + strand, within AMB_RS18615at 4043.269 kb on + strand, within AMB_RS18615at 4043.270 kb on - strand, within AMB_RS18615at 4043.276 kb on + strand, within AMB_RS18615at 4043.277 kb on - strand, within AMB_RS18615at 4043.332 kb on + strand, within AMB_RS18615at 4043.333 kb on - strand, within AMB_RS18615at 4043.333 kb on - strand, within AMB_RS18615at 4043.442 kb on - strand, within AMB_RS18615at 4043.442 kb on - strand, within AMB_RS18615at 4043.775 kb on + strand, within AMB_RS18615at 4043.775 kb on + strand, within AMB_RS18615at 4043.845 kb on - strand, within AMB_RS18615at 4043.845 kb on - strand, within AMB_RS18615at 4043.845 kb on - strand, within AMB_RS18615at 4043.845 kb on - strand, within AMB_RS18615at 4043.937 kb on + strand, within AMB_RS18615at 4043.937 kb on + strand, within AMB_RS18615at 4043.938 kb on - strand, within AMB_RS18615at 4043.953 kb on + strand, within AMB_RS18615at 4043.986 kb on + strandat 4043.987 kb on - strandat 4043.991 kb on + strandat 4043.991 kb on + strandat 4043.991 kb on + strandat 4044.134 kb on + strandat 4044.134 kb on + strandat 4044.134 kb on + strandat 4044.282 kb on + strand, within AMB_RS18620at 4044.282 kb on + strand, within AMB_RS18620at 4044.283 kb on - strand, within AMB_RS18620at 4044.283 kb on - strand, within AMB_RS18620at 4044.324 kb on + strand, within AMB_RS18620at 4044.324 kb on + strand, within AMB_RS18620at 4044.324 kb on + strand, within AMB_RS18620at 4044.324 kb on + strand, within AMB_RS18620at 4044.324 kb on + strand, within AMB_RS18620at 4044.324 kb on + strand, within AMB_RS18620at 4044.324 kb on + strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.325 kb on - strand, within AMB_RS18620at 4044.363 kb on + strand, within AMB_RS18620at 4044.363 kb on + strand, within AMB_RS18620at 4044.363 kb on + strand, within AMB_RS18620at 4044.364 kb on - strand, within AMB_RS18620at 4044.364 kb on - strand, within AMB_RS18620at 4044.364 kb on - strand, within AMB_RS18620at 4044.364 kb on - strand, within AMB_RS18620at 4044.364 kb on - strand, within AMB_RS18620at 4044.364 kb on - strand, within AMB_RS18620at 4044.369 kb on + strand, within AMB_RS18620at 4044.607 kb on - strand, within AMB_RS18620at 4044.624 kb on - strand, within AMB_RS18620at 4044.657 kb on + strand, within AMB_RS18620at 4044.657 kb on + strand, within AMB_RS18620at 4044.657 kb on + strand, within AMB_RS18620at 4044.657 kb on + strand, within AMB_RS18620at 4044.657 kb on + strand, within AMB_RS18620at 4044.657 kb on + strand, within AMB_RS18620at 4044.657 kb on + strand, within AMB_RS18620at 4044.658 kb on - strand, within AMB_RS18620at 4044.658 kb on - strand, within AMB_RS18620at 4044.658 kb on - strand, within AMB_RS18620at 4044.658 kb on - strand, within AMB_RS18620at 4044.711 kb on + strand, within AMB_RS18620at 4044.711 kb on + strand, within AMB_RS18620at 4044.711 kb on + strand, within AMB_RS18620at 4044.712 kb on - strand, within AMB_RS18620at 4044.712 kb on - strand, within AMB_RS18620at 4044.712 kb on - strand, within AMB_RS18620at 4044.807 kb on + strand, within AMB_RS18620at 4044.807 kb on + strand, within AMB_RS18620at 4044.834 kb on + strand, within AMB_RS18620at 4044.834 kb on + strand, within AMB_RS18620at 4044.834 kb on + strand, within AMB_RS18620at 4044.835 kb on - strand, within AMB_RS18620at 4044.958 kb on + strand, within AMB_RS18620at 4044.959 kb on - strand, within AMB_RS18620at 4045.078 kb on + strand, within AMB_RS18620at 4045.106 kb on + strand, within AMB_RS18620at 4045.106 kb on + strand, within AMB_RS18620at 4045.107 kb on - strand, within AMB_RS18620at 4045.107 kb on - strand, within AMB_RS18620at 4045.127 kb on + strand, within AMB_RS18620at 4045.128 kb on - strand, within AMB_RS18620

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
remove
4,041,408 + AMB_RS18610 0.39 -0.4
4,041,504 + AMB_RS18610 0.45 +0.1
4,041,504 + AMB_RS18610 0.45 +0.0
4,041,505 + AMB_RS18610 0.46 +0.2
4,041,505 - AMB_RS18610 0.46 -1.0
4,041,505 - AMB_RS18610 0.46 +0.6
4,041,505 - AMB_RS18610 0.46 +0.1
4,041,505 - AMB_RS18610 0.46 -1.6
4,041,505 - AMB_RS18610 0.46 -1.0
4,041,505 - AMB_RS18610 0.46 -0.1
4,041,702 + AMB_RS18610 0.58 -0.4
4,041,702 + AMB_RS18610 0.58 -0.9
4,041,702 + AMB_RS18610 0.58 -2.2
4,041,702 + AMB_RS18610 0.58 -1.2
4,041,702 + AMB_RS18610 0.58 -1.9
4,041,702 + AMB_RS18610 0.58 -0.6
4,041,702 + AMB_RS18610 0.58 -0.0
4,041,702 + AMB_RS18610 0.58 -1.8
4,041,703 - AMB_RS18610 0.58 -0.4
4,041,703 - AMB_RS18610 0.58 +0.7
4,041,703 - AMB_RS18610 0.58 -1.9
4,041,703 - AMB_RS18610 0.58 -0.8
4,041,703 - AMB_RS18610 0.58 -3.2
4,041,703 - AMB_RS18610 0.58 -0.2
4,041,703 - AMB_RS18610 0.58 -1.4
4,041,703 - AMB_RS18610 0.58 +0.6
4,041,703 - AMB_RS18610 0.58 -3.0
4,041,703 - AMB_RS18610 0.58 +0.6
4,041,703 - AMB_RS18610 0.58 -2.0
4,041,708 + AMB_RS18610 0.59 -0.5
4,041,709 - AMB_RS18610 0.59 -0.1
4,042,385 + -2.0
4,042,385 + -2.9
4,042,580 + AMB_RS18615 0.13 -0.0
4,042,580 + AMB_RS18615 0.13 -3.8
4,042,580 + AMB_RS18615 0.13 +0.2
4,042,580 + AMB_RS18615 0.13 -0.1
4,042,580 + AMB_RS18615 0.13 -0.3
4,042,581 - AMB_RS18615 0.13 -1.0
4,042,581 - AMB_RS18615 0.13 +0.4
4,042,581 - AMB_RS18615 0.13 -1.0
4,042,581 - AMB_RS18615 0.13 -1.5
4,042,581 - AMB_RS18615 0.13 +0.3
4,042,727 - AMB_RS18615 0.21 -1.2
4,043,055 + AMB_RS18615 0.40 +0.4
4,043,055 + AMB_RS18615 0.40 -2.3
4,043,090 + AMB_RS18615 0.42 -0.7
4,043,091 - AMB_RS18615 0.42 +0.0
4,043,265 + AMB_RS18615 0.51 -2.0
4,043,265 + AMB_RS18615 0.51 -0.0
4,043,265 + AMB_RS18615 0.51 -1.9
4,043,265 + AMB_RS18615 0.51 -1.9
4,043,265 + AMB_RS18615 0.51 +0.2
4,043,266 - AMB_RS18615 0.51 -0.0
4,043,266 - AMB_RS18615 0.51 -2.2
4,043,266 - AMB_RS18615 0.51 -0.0
4,043,266 - AMB_RS18615 0.51 -1.0
4,043,266 - AMB_RS18615 0.51 +0.3
4,043,266 - AMB_RS18615 0.51 -0.8
4,043,269 + AMB_RS18615 0.52 -1.0
4,043,269 + AMB_RS18615 0.52 -0.2
4,043,270 - AMB_RS18615 0.52 -0.8
4,043,276 + AMB_RS18615 0.52 -0.4
4,043,277 - AMB_RS18615 0.52 -2.1
4,043,332 + AMB_RS18615 0.55 -1.2
4,043,333 - AMB_RS18615 0.55 -0.3
4,043,333 - AMB_RS18615 0.55 -2.0
4,043,442 - AMB_RS18615 0.61 -2.8
4,043,442 - AMB_RS18615 0.61 -1.2
4,043,775 + AMB_RS18615 0.80 +0.5
4,043,775 + AMB_RS18615 0.80 +1.1
4,043,845 - AMB_RS18615 0.84 -0.8
4,043,845 - AMB_RS18615 0.84 +0.0
4,043,845 - AMB_RS18615 0.84 -0.5
4,043,845 - AMB_RS18615 0.84 +0.6
4,043,937 + AMB_RS18615 0.89 -0.4
4,043,937 + AMB_RS18615 0.89 -0.4
4,043,938 - AMB_RS18615 0.89 -1.0
4,043,953 + AMB_RS18615 0.90 -0.3
4,043,986 + -1.9
4,043,987 - -1.4
4,043,991 + -0.0
4,043,991 + -0.8
4,043,991 + -1.4
4,044,134 + +0.2
4,044,134 + -0.3
4,044,134 + -0.8
4,044,282 + AMB_RS18620 0.11 +0.5
4,044,282 + AMB_RS18620 0.11 -0.7
4,044,283 - AMB_RS18620 0.11 -0.8
4,044,283 - AMB_RS18620 0.11 -0.2
4,044,324 + AMB_RS18620 0.14 +1.1
4,044,324 + AMB_RS18620 0.14 -1.6
4,044,324 + AMB_RS18620 0.14 -1.8
4,044,324 + AMB_RS18620 0.14 -0.0
4,044,324 + AMB_RS18620 0.14 -0.0
4,044,324 + AMB_RS18620 0.14 -0.3
4,044,324 + AMB_RS18620 0.14 -0.8
4,044,325 - AMB_RS18620 0.14 -0.7
4,044,325 - AMB_RS18620 0.14 -0.3
4,044,325 - AMB_RS18620 0.14 -0.4
4,044,325 - AMB_RS18620 0.14 -0.0
4,044,325 - AMB_RS18620 0.14 -0.4
4,044,325 - AMB_RS18620 0.14 -0.8
4,044,325 - AMB_RS18620 0.14 +0.3
4,044,325 - AMB_RS18620 0.14 -1.0
4,044,325 - AMB_RS18620 0.14 -0.4
4,044,363 + AMB_RS18620 0.17 +0.1
4,044,363 + AMB_RS18620 0.17 -0.8
4,044,363 + AMB_RS18620 0.17 -0.8
4,044,364 - AMB_RS18620 0.18 -0.5
4,044,364 - AMB_RS18620 0.18 -0.4
4,044,364 - AMB_RS18620 0.18 +0.5
4,044,364 - AMB_RS18620 0.18 -0.8
4,044,364 - AMB_RS18620 0.18 -0.4
4,044,364 - AMB_RS18620 0.18 +0.6
4,044,369 + AMB_RS18620 0.18 +0.9
4,044,607 - AMB_RS18620 0.38 -2.0
4,044,624 - AMB_RS18620 0.39 -0.4
4,044,657 + AMB_RS18620 0.42 +0.6
4,044,657 + AMB_RS18620 0.42 +0.3
4,044,657 + AMB_RS18620 0.42 -0.1
4,044,657 + AMB_RS18620 0.42 -0.1
4,044,657 + AMB_RS18620 0.42 -0.0
4,044,657 + AMB_RS18620 0.42 -0.8
4,044,657 + AMB_RS18620 0.42 -0.2
4,044,658 - AMB_RS18620 0.42 +0.1
4,044,658 - AMB_RS18620 0.42 -0.3
4,044,658 - AMB_RS18620 0.42 -0.2
4,044,658 - AMB_RS18620 0.42 -0.3
4,044,711 + AMB_RS18620 0.46 -0.8
4,044,711 + AMB_RS18620 0.46 -0.4
4,044,711 + AMB_RS18620 0.46 +0.2
4,044,712 - AMB_RS18620 0.46 -0.0
4,044,712 - AMB_RS18620 0.46 +0.1
4,044,712 - AMB_RS18620 0.46 -1.6
4,044,807 + AMB_RS18620 0.54 -2.0
4,044,807 + AMB_RS18620 0.54 -1.6
4,044,834 + AMB_RS18620 0.56 +0.7
4,044,834 + AMB_RS18620 0.56 -1.0
4,044,834 + AMB_RS18620 0.56 -0.1
4,044,835 - AMB_RS18620 0.56 +0.1
4,044,958 + AMB_RS18620 0.67 -0.0
4,044,959 - AMB_RS18620 0.67 +0.2
4,045,078 + AMB_RS18620 0.77 +0.4
4,045,106 + AMB_RS18620 0.79 -0.4
4,045,106 + AMB_RS18620 0.79 -0.3
4,045,107 - AMB_RS18620 0.79 -0.5
4,045,107 - AMB_RS18620 0.79 +1.0
4,045,127 + AMB_RS18620 0.81 +0.1
4,045,128 - AMB_RS18620 0.81 -0.4

Or see this region's nucleotide sequence