Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16350

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16340 and AMB_RS16345 are separated by 124 nucleotidesAMB_RS16345 and AMB_RS16350 are separated by 3 nucleotidesAMB_RS16350 and AMB_RS16355 are separated by 466 nucleotides AMB_RS16340: AMB_RS16340 - penicillin-binding protein 1A, at 3,497,408 to 3,499,966 _RS16340 AMB_RS16345: AMB_RS16345 - hypothetical protein, at 3,500,091 to 3,500,420 _RS16345 AMB_RS16350: AMB_RS16350 - N-acetylmuramoyl-L-alanine amidase, at 3,500,424 to 3,502,118 _RS16350 AMB_RS16355: AMB_RS16355 - ribonuclease E/G, at 3,502,585 to 3,505,326 _RS16355 Position (kb) 3500 3501 3502 3503Strain fitness (log2 ratio) -2 -1 0 1at 3499.840 kb on - strandat 3500.045 kb on + strandat 3500.278 kb on + strand, within AMB_RS16345at 3500.278 kb on + strand, within AMB_RS16345at 3500.279 kb on - strand, within AMB_RS16345at 3500.425 kb on + strandat 3502.130 kb on - strandat 3502.132 kb on - strandat 3502.252 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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3,499,840 - -0.5
3,500,045 + -1.8
3,500,278 + AMB_RS16345 0.57 -2.3
3,500,278 + AMB_RS16345 0.57 +0.1
3,500,279 - AMB_RS16345 0.57 -0.2
3,500,425 + +0.6
3,502,130 - -0.2
3,502,132 - -1.1
3,502,252 + -1.3

Or see this region's nucleotide sequence