Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16300

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16285 and AMB_RS16290 are separated by 3 nucleotidesAMB_RS16290 and AMB_RS16295 are separated by 157 nucleotidesAMB_RS16295 and AMB_RS16300 overlap by 4 nucleotidesAMB_RS16300 and AMB_RS16305 are separated by 76 nucleotides AMB_RS16285: AMB_RS16285 - cell division protein ZapA, at 3,488,247 to 3,488,573 _RS16285 AMB_RS16290: AMB_RS16290 - hypothetical protein, at 3,488,577 to 3,488,789 _RS16290 AMB_RS16295: AMB_RS16295 - DUF3124 domain-containing protein, at 3,488,947 to 3,489,450 _RS16295 AMB_RS16300: AMB_RS16300 - hypothetical protein, at 3,489,447 to 3,489,773 _RS16300 AMB_RS16305: AMB_RS16305 - electron transfer flavoprotein subunit alpha, at 3,489,850 to 3,490,788 _RS16305 Position (kb) 3489 3490Strain fitness (log2 ratio) -1 0 1at 3488.908 kb on + strandat 3489.791 kb on + strandat 3489.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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3,488,908 + -0.1
3,489,791 + -1.7
3,489,791 + -0.8

Or see this region's nucleotide sequence