Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10395

Experiment: 150_an_nonmag_3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	150_an_nonmag_3
2,239,946	-		AMB_RS10385	0.31	-2.6
2,239,966	+		AMB_RS10385	0.35	+4.4
2,240,029	+		AMB_RS10385	0.50	-0.5
2,240,067	-		AMB_RS10385	0.58	-0.5
2,240,248	+				+1.4
2,240,248	+				-0.3
2,240,248	+				-1.2
2,240,249	-				-0.9
2,240,249	-				-0.7
2,240,249	-				-0.2
2,240,249	-				-0.4
2,240,249	-				-0.1
2,240,384	+		AMB_RS10390	0.24	-0.3
2,240,385	-		AMB_RS10390	0.24	-2.1
2,240,385	-		AMB_RS10390	0.24	-0.4
2,240,385	-		AMB_RS10390	0.24	-0.4
2,240,436	+		AMB_RS10390	0.42	-0.2
2,240,436	+		AMB_RS10390	0.42	+0.1
2,240,437	-		AMB_RS10390	0.42	+0.8
2,240,500	-		AMB_RS10390	0.64	-0.2
2,240,508	+		AMB_RS10390	0.67	-1.6
2,240,508	+		AMB_RS10390	0.67	-1.2
2,240,509	-		AMB_RS10390	0.67	-0.7
2,240,580	-				-0.6
2,240,580	-				-1.4
2,240,580	-				-0.5
2,240,580	-				-0.3
2,240,605	-				-2.8
2,240,725	+		AMB_RS10395	0.12	-0.3
2,240,725	+		AMB_RS10395	0.12	+0.9
2,240,726	-		AMB_RS10395	0.12	-0.1
2,240,726	-		AMB_RS10395	0.12	-2.4
2,240,726	-		AMB_RS10395	0.12	-0.4
2,240,730	+		AMB_RS10395	0.12	-1.4
2,240,908	+		AMB_RS10395	0.25	+0.4
2,240,908	+		AMB_RS10395	0.25	-1.1
2,240,909	-		AMB_RS10395	0.25	-1.2
2,240,909	-		AMB_RS10395	0.25	-1.2
2,240,909	-		AMB_RS10395	0.25	-0.9
2,240,909	-		AMB_RS10395	0.25	+0.2
2,240,911	-		AMB_RS10395	0.25	-0.3
2,240,911	-		AMB_RS10395	0.25	-0.7
2,240,911	-		AMB_RS10395	0.25	-1.0
2,241,052	+		AMB_RS10395	0.36	-1.2
2,241,052	+		AMB_RS10395	0.36	-0.8
2,241,053	-		AMB_RS10395	0.36	-0.2
2,241,108	+		AMB_RS10395	0.40	-0.2
2,241,109	-		AMB_RS10395	0.40	-0.7
2,241,109	-		AMB_RS10395	0.40	-0.8
2,241,124	-		AMB_RS10395	0.41	-0.6
2,241,124	-		AMB_RS10395	0.41	-1.6
2,241,124	-		AMB_RS10395	0.41	-0.4
2,241,157	+		AMB_RS10395	0.43	-1.6
2,241,269	+		AMB_RS10395	0.51	-0.3
2,241,269	+		AMB_RS10395	0.51	-1.8
2,241,269	+		AMB_RS10395	0.51	+0.0
2,241,269	+		AMB_RS10395	0.51	-2.4
2,241,269	+		AMB_RS10395	0.51	+2.2
2,241,269	+		AMB_RS10395	0.51	-1.6
2,241,269	+		AMB_RS10395	0.51	-0.2
2,241,269	+		AMB_RS10395	0.51	+1.0
2,241,269	+		AMB_RS10395	0.51	+0.8
2,241,269	+		AMB_RS10395	0.51	+0.4
2,241,270	-		AMB_RS10395	0.51	-1.8
2,241,270	-		AMB_RS10395	0.51	-0.2
2,241,270	-		AMB_RS10395	0.51	+0.1
2,241,270	-		AMB_RS10395	0.51	-0.1
2,241,270	-		AMB_RS10395	0.51	+1.4
2,241,270	-		AMB_RS10395	0.51	-0.9
2,241,270	-		AMB_RS10395	0.51	+0.5
2,241,312	+		AMB_RS10395	0.54	-0.6
2,241,312	+		AMB_RS10395	0.54	+0.8
2,241,312	+		AMB_RS10395	0.54	-0.6
2,241,312	+		AMB_RS10395	0.54	-1.0
2,241,313	-		AMB_RS10395	0.54	+0.6
2,241,313	-		AMB_RS10395	0.54	-1.1
2,241,313	-		AMB_RS10395	0.54	+1.4
2,241,313	-		AMB_RS10395	0.54	-1.4
2,241,337	-		AMB_RS10395	0.56	-0.0
2,241,447	+		AMB_RS10395	0.64	-1.2
2,241,447	+		AMB_RS10395	0.64	+0.4
2,241,447	+		AMB_RS10395	0.64	+1.0
2,241,447	+		AMB_RS10395	0.64	-0.6
2,241,447	+		AMB_RS10395	0.64	-0.6
2,241,447	+		AMB_RS10395	0.64	+0.7
2,241,447	+		AMB_RS10395	0.64	-0.7
2,241,448	-		AMB_RS10395	0.64	-2.2
2,241,448	-		AMB_RS10395	0.64	-0.8
2,241,448	-		AMB_RS10395	0.64	-1.4
2,241,448	-		AMB_RS10395	0.64	+1.1
2,241,448	-		AMB_RS10395	0.64	-1.5
2,241,448	-		AMB_RS10395	0.64	-2.3
2,241,448	-		AMB_RS10395	0.64	-2.4
2,241,448	-		AMB_RS10395	0.64	+0.4
2,241,501	+		AMB_RS10395	0.68	+0.7
2,241,525	+		AMB_RS10395	0.70	-1.4
2,241,525	+		AMB_RS10395	0.70	-2.6
2,241,526	-		AMB_RS10395	0.70	-0.2
2,241,526	-		AMB_RS10395	0.70	-0.2
2,241,549	+		AMB_RS10395	0.71	-0.9
2,241,549	+		AMB_RS10395	0.71	+0.5
2,241,549	+		AMB_RS10395	0.71	+0.4
2,241,550	-		AMB_RS10395	0.71	-0.5
2,241,550	-		AMB_RS10395	0.71	-0.0
2,241,700	+		AMB_RS10395	0.82	-4.3
2,241,700	+		AMB_RS10395	0.82	-1.6
2,241,700	+		AMB_RS10395	0.82	-1.8
2,241,700	+		AMB_RS10395	0.82	+0.4
2,241,700	+		AMB_RS10395	0.82	-0.5
2,241,700	+		AMB_RS10395	0.82	-0.8
2,241,701	-		AMB_RS10395	0.82	-1.6
2,241,701	-		AMB_RS10395	0.82	-3.6
2,241,701	-		AMB_RS10395	0.82	-1.2
2,241,745	+		AMB_RS10395	0.85	+0.9
2,242,018	-		AMB_RS10400	0.18	-0.4
2,242,025	+		AMB_RS10400	0.20	-0.3
2,242,085	+		AMB_RS10400	0.35	-0.6
2,242,085	+		AMB_RS10400	0.35	-0.6
2,242,086	-		AMB_RS10400	0.35	-0.6
2,242,086	-		AMB_RS10400	0.35	-0.4
2,242,116	-		AMB_RS10400	0.42	-0.6
2,242,116	-		AMB_RS10400	0.42	-1.6
2,242,155	+		AMB_RS10400	0.52	-1.6
2,242,155	+		AMB_RS10400	0.52	-1.1
2,242,156	-		AMB_RS10400	0.52	-1.2
2,242,175	+		AMB_RS10400	0.57	-0.7
2,242,176	-		AMB_RS10400	0.57	+1.4
2,242,176	-		AMB_RS10400	0.57	+0.1
2,242,176	-		AMB_RS10400	0.57	-0.6
2,242,179	+		AMB_RS10400	0.58	-0.2
2,242,179	+		AMB_RS10400	0.58	-3.2
2,242,179	+		AMB_RS10400	0.58	+0.6
2,242,180	-		AMB_RS10400	0.58	-0.4
2,242,191	+		AMB_RS10400	0.61	+0.2
2,242,192	-		AMB_RS10400	0.61	-1.1
2,242,192	-		AMB_RS10400	0.61	-0.7
2,242,192	-		AMB_RS10400	0.61	+0.8
2,242,313	+				-0.9
2,242,314	-				-2.5
2,242,314	-				-0.5
2,242,314	-				-0.6
2,242,349	+				-0.6
2,242,350	-				+0.4
2,242,350	-				-2.1
2,242,350	-				-0.5
2,242,350	-				-0.9
2,242,350	-				-0.1
2,242,459	+		AMB_RS10405	0.15	+0.1
2,242,625	+		AMB_RS10405	0.38	+0.5
2,242,625	+		AMB_RS10405	0.38	-1.8
2,242,625	+		AMB_RS10405	0.38	-2.6
2,242,625	+		AMB_RS10405	0.38	-0.9
2,242,716	+		AMB_RS10405	0.50	-1.4
2,242,717	-		AMB_RS10405	0.50	-0.6
2,242,743	+		AMB_RS10405	0.54	+0.1
2,242,744	-		AMB_RS10405	0.54	-1.6
2,242,744	-		AMB_RS10405	0.54	-0.9
2,242,748	+		AMB_RS10405	0.54	-0.7
2,242,749	-		AMB_RS10405	0.54	+0.9
2,242,913	+		AMB_RS10405	0.77	+0.4
2,242,914	-		AMB_RS10405	0.77	+0.7
2,242,914	-		AMB_RS10405	0.77	-0.1