Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS09195

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS09185 and AMB_RS09190 are separated by 28 nucleotidesAMB_RS09190 and AMB_RS09195 are separated by 102 nucleotidesAMB_RS09195 and AMB_RS09200 are separated by 10 nucleotidesAMB_RS09200 and AMB_RS09205 are separated by 133 nucleotides AMB_RS09185: AMB_RS09185 - hypothetical protein, at 1,956,551 to 1,956,952 _RS09185 AMB_RS09190: AMB_RS09190 - sulfurtransferase TusA family protein, at 1,956,981 to 1,957,211 _RS09190 AMB_RS09195: AMB_RS09195 - NAD(P)/FAD-dependent oxidoreductase, at 1,957,314 to 1,958,453 _RS09195 AMB_RS09200: AMB_RS09200 - hypothetical protein, at 1,958,464 to 1,958,985 _RS09200 AMB_RS09205: AMB_RS09205 - triose-phosphate isomerase, at 1,959,119 to 1,959,874 _RS09205 Position (kb) 1957 1958 1959Strain fitness (log2 ratio) -3 -2 -1 0 1at 1956.345 kb on - strandat 1956.345 kb on - strandat 1956.345 kb on - strandat 1956.428 kb on + strandat 1956.428 kb on + strandat 1956.428 kb on + strandat 1956.428 kb on + strandat 1956.429 kb on - strandat 1956.429 kb on - strandat 1956.429 kb on - strandat 1956.429 kb on - strandat 1956.533 kb on - strandat 1956.569 kb on + strandat 1956.569 kb on + strandat 1956.570 kb on - strandat 1957.285 kb on - strandat 1957.373 kb on + strandat 1957.373 kb on + strandat 1957.374 kb on - strandat 1957.374 kb on - strandat 1957.448 kb on + strand, within AMB_RS09195at 1957.449 kb on - strand, within AMB_RS09195at 1957.449 kb on - strand, within AMB_RS09195at 1957.449 kb on - strand, within AMB_RS09195at 1957.449 kb on - strand, within AMB_RS09195at 1957.449 kb on - strand, within AMB_RS09195at 1957.452 kb on + strand, within AMB_RS09195at 1957.452 kb on + strand, within AMB_RS09195at 1957.452 kb on + strand, within AMB_RS09195at 1957.452 kb on + strand, within AMB_RS09195at 1957.453 kb on - strand, within AMB_RS09195at 1957.453 kb on - strand, within AMB_RS09195at 1957.453 kb on - strand, within AMB_RS09195at 1957.453 kb on - strand, within AMB_RS09195at 1957.453 kb on - strand, within AMB_RS09195at 1957.453 kb on - strand, within AMB_RS09195at 1957.470 kb on + strand, within AMB_RS09195at 1957.470 kb on + strand, within AMB_RS09195at 1957.471 kb on - strand, within AMB_RS09195at 1957.471 kb on - strand, within AMB_RS09195at 1957.471 kb on - strand, within AMB_RS09195at 1957.471 kb on - strand, within AMB_RS09195at 1957.471 kb on - strand, within AMB_RS09195at 1957.472 kb on + strand, within AMB_RS09195at 1957.472 kb on + strand, within AMB_RS09195at 1957.472 kb on + strand, within AMB_RS09195at 1957.472 kb on + strand, within AMB_RS09195at 1957.473 kb on - strand, within AMB_RS09195at 1957.533 kb on - strand, within AMB_RS09195at 1957.611 kb on - strand, within AMB_RS09195at 1957.620 kb on + strand, within AMB_RS09195at 1957.620 kb on + strand, within AMB_RS09195at 1957.620 kb on + strand, within AMB_RS09195at 1957.620 kb on + strand, within AMB_RS09195at 1957.620 kb on + strand, within AMB_RS09195at 1957.620 kb on + strand, within AMB_RS09195at 1957.620 kb on + strand, within AMB_RS09195at 1957.621 kb on - strand, within AMB_RS09195at 1957.621 kb on - strand, within AMB_RS09195at 1957.621 kb on - strand, within AMB_RS09195at 1957.621 kb on - strand, within AMB_RS09195at 1957.621 kb on - strand, within AMB_RS09195at 1957.621 kb on - strand, within AMB_RS09195at 1957.621 kb on - strand, within AMB_RS09195at 1957.702 kb on - strand, within AMB_RS09195at 1957.721 kb on + strand, within AMB_RS09195at 1957.722 kb on - strand, within AMB_RS09195at 1957.817 kb on - strand, within AMB_RS09195at 1957.875 kb on + strand, within AMB_RS09195at 1957.875 kb on + strand, within AMB_RS09195at 1957.875 kb on + strand, within AMB_RS09195at 1957.875 kb on + strand, within AMB_RS09195at 1957.875 kb on + strand, within AMB_RS09195at 1957.875 kb on + strand, within AMB_RS09195at 1957.875 kb on + strand, within AMB_RS09195at 1957.876 kb on - strand, within AMB_RS09195at 1957.876 kb on - strand, within AMB_RS09195at 1957.876 kb on - strand, within AMB_RS09195at 1957.876 kb on - strand, within AMB_RS09195at 1957.876 kb on - strand, within AMB_RS09195at 1957.876 kb on - strand, within AMB_RS09195at 1957.876 kb on - strand, within AMB_RS09195at 1957.882 kb on - strand, within AMB_RS09195at 1957.882 kb on - strand, within AMB_RS09195at 1957.882 kb on - strand, within AMB_RS09195at 1957.882 kb on - strand, within AMB_RS09195at 1958.037 kb on + strand, within AMB_RS09195at 1958.037 kb on + strand, within AMB_RS09195at 1958.037 kb on + strand, within AMB_RS09195at 1958.037 kb on + strand, within AMB_RS09195at 1958.038 kb on - strand, within AMB_RS09195at 1958.286 kb on + strand, within AMB_RS09195at 1958.286 kb on + strand, within AMB_RS09195at 1958.337 kb on + strand, within AMB_RS09195at 1958.337 kb on + strand, within AMB_RS09195at 1958.337 kb on + strand, within AMB_RS09195at 1958.337 kb on + strand, within AMB_RS09195at 1958.338 kb on - strand, within AMB_RS09195at 1958.338 kb on - strand, within AMB_RS09195at 1958.338 kb on - strand, within AMB_RS09195at 1958.338 kb on - strand, within AMB_RS09195at 1958.338 kb on - strand, within AMB_RS09195at 1958.353 kb on - strandat 1958.412 kb on + strandat 1958.413 kb on - strandat 1958.425 kb on - strandat 1958.425 kb on - strandat 1958.425 kb on - strandat 1958.452 kb on - strandat 1958.452 kb on - strandat 1958.959 kb on + strandat 1958.983 kb on + strandat 1959.052 kb on + strandat 1959.073 kb on + strandat 1959.073 kb on + strandat 1959.073 kb on + strandat 1959.075 kb on + strandat 1959.075 kb on + strandat 1959.075 kb on + strandat 1959.075 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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1,956,345 - -0.1
1,956,345 - +0.4
1,956,345 - -1.1
1,956,428 + -1.9
1,956,428 + -0.9
1,956,428 + -0.1
1,956,428 + -0.1
1,956,429 - -0.2
1,956,429 - +0.3
1,956,429 - -1.7
1,956,429 - +0.1
1,956,533 - -3.6
1,956,569 + -1.7
1,956,569 + -0.2
1,956,570 - -1.7
1,957,285 - -0.1
1,957,373 + -0.1
1,957,373 + +1.4
1,957,374 - -2.6
1,957,374 - -1.6
1,957,448 + AMB_RS09195 0.12 +0.0
1,957,449 - AMB_RS09195 0.12 +0.0
1,957,449 - AMB_RS09195 0.12 -2.0
1,957,449 - AMB_RS09195 0.12 -0.3
1,957,449 - AMB_RS09195 0.12 -0.6
1,957,449 - AMB_RS09195 0.12 +0.2
1,957,452 + AMB_RS09195 0.12 +0.4
1,957,452 + AMB_RS09195 0.12 +0.0
1,957,452 + AMB_RS09195 0.12 -1.4
1,957,452 + AMB_RS09195 0.12 -0.5
1,957,453 - AMB_RS09195 0.12 +0.1
1,957,453 - AMB_RS09195 0.12 -1.1
1,957,453 - AMB_RS09195 0.12 -0.6
1,957,453 - AMB_RS09195 0.12 -0.3
1,957,453 - AMB_RS09195 0.12 -0.6
1,957,453 - AMB_RS09195 0.12 +0.3
1,957,470 + AMB_RS09195 0.14 -0.9
1,957,470 + AMB_RS09195 0.14 -0.1
1,957,471 - AMB_RS09195 0.14 -2.0
1,957,471 - AMB_RS09195 0.14 -1.3
1,957,471 - AMB_RS09195 0.14 +0.5
1,957,471 - AMB_RS09195 0.14 -0.2
1,957,471 - AMB_RS09195 0.14 +0.9
1,957,472 + AMB_RS09195 0.14 -0.6
1,957,472 + AMB_RS09195 0.14 +0.3
1,957,472 + AMB_RS09195 0.14 +0.3
1,957,472 + AMB_RS09195 0.14 +0.1
1,957,473 - AMB_RS09195 0.14 -0.5
1,957,533 - AMB_RS09195 0.19 +0.2
1,957,611 - AMB_RS09195 0.26 +0.2
1,957,620 + AMB_RS09195 0.27 -0.1
1,957,620 + AMB_RS09195 0.27 -0.4
1,957,620 + AMB_RS09195 0.27 -2.3
1,957,620 + AMB_RS09195 0.27 +0.6
1,957,620 + AMB_RS09195 0.27 +0.6
1,957,620 + AMB_RS09195 0.27 +0.6
1,957,620 + AMB_RS09195 0.27 -0.7
1,957,621 - AMB_RS09195 0.27 +0.1
1,957,621 - AMB_RS09195 0.27 -2.9
1,957,621 - AMB_RS09195 0.27 -0.9
1,957,621 - AMB_RS09195 0.27 -1.3
1,957,621 - AMB_RS09195 0.27 +0.5
1,957,621 - AMB_RS09195 0.27 -2.4
1,957,621 - AMB_RS09195 0.27 +1.6
1,957,702 - AMB_RS09195 0.34 +0.4
1,957,721 + AMB_RS09195 0.36 -0.1
1,957,722 - AMB_RS09195 0.36 -1.4
1,957,817 - AMB_RS09195 0.44 -0.2
1,957,875 + AMB_RS09195 0.49 -0.1
1,957,875 + AMB_RS09195 0.49 +1.4
1,957,875 + AMB_RS09195 0.49 +0.4
1,957,875 + AMB_RS09195 0.49 -0.9
1,957,875 + AMB_RS09195 0.49 -0.4
1,957,875 + AMB_RS09195 0.49 +0.9
1,957,875 + AMB_RS09195 0.49 -0.2
1,957,876 - AMB_RS09195 0.49 -1.4
1,957,876 - AMB_RS09195 0.49 -0.3
1,957,876 - AMB_RS09195 0.49 -0.9
1,957,876 - AMB_RS09195 0.49 -1.4
1,957,876 - AMB_RS09195 0.49 -0.6
1,957,876 - AMB_RS09195 0.49 -0.1
1,957,876 - AMB_RS09195 0.49 -1.2
1,957,882 - AMB_RS09195 0.50 -1.7
1,957,882 - AMB_RS09195 0.50 -1.4
1,957,882 - AMB_RS09195 0.50 -1.1
1,957,882 - AMB_RS09195 0.50 -1.9
1,958,037 + AMB_RS09195 0.63 +0.4
1,958,037 + AMB_RS09195 0.63 -0.3
1,958,037 + AMB_RS09195 0.63 -0.1
1,958,037 + AMB_RS09195 0.63 +0.1
1,958,038 - AMB_RS09195 0.64 -1.4
1,958,286 + AMB_RS09195 0.85 -0.6
1,958,286 + AMB_RS09195 0.85 -0.3
1,958,337 + AMB_RS09195 0.90 -0.3
1,958,337 + AMB_RS09195 0.90 -0.9
1,958,337 + AMB_RS09195 0.90 -1.4
1,958,337 + AMB_RS09195 0.90 +0.2
1,958,338 - AMB_RS09195 0.90 -0.9
1,958,338 - AMB_RS09195 0.90 +1.5
1,958,338 - AMB_RS09195 0.90 -1.9
1,958,338 - AMB_RS09195 0.90 -2.1
1,958,338 - AMB_RS09195 0.90 -0.1
1,958,353 - -2.4
1,958,412 + -1.4
1,958,413 - +0.4
1,958,425 - -2.4
1,958,425 - +0.2
1,958,425 - +0.2
1,958,452 - +1.1
1,958,452 - +1.4
1,958,959 + -0.2
1,958,983 + -3.1
1,959,052 + +0.4
1,959,073 + -0.9
1,959,073 + -0.2
1,959,073 + +0.2
1,959,075 + +0.4
1,959,075 + -1.6
1,959,075 + +1.5
1,959,075 + -1.9

Or see this region's nucleotide sequence