Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08495

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08490 and AMB_RS08495 are separated by 2 nucleotidesAMB_RS08495 and AMB_RS08500 are separated by 237 nucleotides AMB_RS08490: AMB_RS08490 - FAD-dependent oxidoreductase, at 1,816,243 to 1,817,478 _RS08490 AMB_RS08495: AMB_RS08495 - hypothetical protein, at 1,817,481 to 1,818,890 _RS08495 AMB_RS08500: AMB_RS08500 - iron permease, at 1,819,128 to 1,819,937 _RS08500 Position (kb) 1817 1818 1819Strain fitness (log2 ratio) -3 -2 -1 0 1at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.618 kb on + strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.619 kb on - strand, within AMB_RS08490at 1816.793 kb on - strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.209 kb on + strand, within AMB_RS08490at 1817.210 kb on - strand, within AMB_RS08490at 1817.336 kb on - strand, within AMB_RS08490at 1817.476 kb on + strandat 1817.476 kb on + strandat 1817.477 kb on - strandat 1817.477 kb on - strandat 1817.477 kb on - strandat 1817.766 kb on + strand, within AMB_RS08495at 1817.767 kb on - strand, within AMB_RS08495at 1818.054 kb on + strand, within AMB_RS08495at 1818.054 kb on + strand, within AMB_RS08495at 1818.054 kb on + strand, within AMB_RS08495at 1818.055 kb on - strand, within AMB_RS08495at 1818.141 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.258 kb on + strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.259 kb on - strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.282 kb on + strand, within AMB_RS08495at 1818.423 kb on + strand, within AMB_RS08495at 1818.423 kb on + strand, within AMB_RS08495at 1818.447 kb on + strand, within AMB_RS08495at 1818.447 kb on + strand, within AMB_RS08495at 1818.447 kb on + strand, within AMB_RS08495at 1818.510 kb on + strand, within AMB_RS08495at 1818.511 kb on - strand, within AMB_RS08495at 1818.511 kb on - strand, within AMB_RS08495at 1818.511 kb on - strand, within AMB_RS08495at 1818.511 kb on - strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.518 kb on + strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.519 kb on - strand, within AMB_RS08495at 1818.522 kb on + strand, within AMB_RS08495at 1818.522 kb on + strand, within AMB_RS08495at 1818.522 kb on + strand, within AMB_RS08495at 1818.618 kb on + strand, within AMB_RS08495at 1818.618 kb on + strand, within AMB_RS08495at 1818.618 kb on + strand, within AMB_RS08495at 1818.626 kb on + strand, within AMB_RS08495at 1818.627 kb on - strand, within AMB_RS08495at 1818.682 kb on - strand, within AMB_RS08495at 1818.682 kb on - strand, within AMB_RS08495at 1818.702 kb on + strand, within AMB_RS08495at 1818.702 kb on + strand, within AMB_RS08495at 1818.703 kb on - strand, within AMB_RS08495at 1818.893 kb on + strandat 1818.894 kb on - strandat 1819.189 kb on + strandat 1819.223 kb on + strand, within AMB_RS08500at 1819.223 kb on + strand, within AMB_RS08500at 1819.224 kb on - strand, within AMB_RS08500at 1819.224 kb on - strand, within AMB_RS08500at 1819.224 kb on - strand, within AMB_RS08500at 1819.224 kb on - strand, within AMB_RS08500at 1819.224 kb on - strand, within AMB_RS08500at 1819.225 kb on + strand, within AMB_RS08500at 1819.226 kb on - strand, within AMB_RS08500at 1819.226 kb on - strand, within AMB_RS08500at 1819.226 kb on - strand, within AMB_RS08500at 1819.226 kb on - strand, within AMB_RS08500at 1819.226 kb on - strand, within AMB_RS08500at 1819.336 kb on + strand, within AMB_RS08500at 1819.336 kb on + strand, within AMB_RS08500at 1819.337 kb on - strand, within AMB_RS08500at 1819.337 kb on - strand, within AMB_RS08500

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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1,816,618 + AMB_RS08490 0.30 -0.1
1,816,618 + AMB_RS08490 0.30 -2.3
1,816,618 + AMB_RS08490 0.30 -0.6
1,816,618 + AMB_RS08490 0.30 +1.1
1,816,619 - AMB_RS08490 0.30 -0.1
1,816,619 - AMB_RS08490 0.30 +1.4
1,816,619 - AMB_RS08490 0.30 -0.1
1,816,619 - AMB_RS08490 0.30 -0.4
1,816,619 - AMB_RS08490 0.30 -0.3
1,816,619 - AMB_RS08490 0.30 -0.9
1,816,619 - AMB_RS08490 0.30 +1.5
1,816,793 - AMB_RS08490 0.44 -0.9
1,817,209 + AMB_RS08490 0.78 +0.1
1,817,209 + AMB_RS08490 0.78 +0.4
1,817,209 + AMB_RS08490 0.78 -1.3
1,817,210 - AMB_RS08490 0.78 -1.9
1,817,336 - AMB_RS08490 0.88 -2.1
1,817,476 + -2.8
1,817,476 + -1.7
1,817,477 - +0.7
1,817,477 - +0.5
1,817,477 - +0.4
1,817,766 + AMB_RS08495 0.20 -0.2
1,817,767 - AMB_RS08495 0.20 -2.1
1,818,054 + AMB_RS08495 0.41 -0.5
1,818,054 + AMB_RS08495 0.41 -1.6
1,818,054 + AMB_RS08495 0.41 +0.1
1,818,055 - AMB_RS08495 0.41 +0.5
1,818,141 + AMB_RS08495 0.47 +0.7
1,818,258 + AMB_RS08495 0.55 -1.1
1,818,258 + AMB_RS08495 0.55 -0.9
1,818,258 + AMB_RS08495 0.55 -0.5
1,818,258 + AMB_RS08495 0.55 +0.2
1,818,258 + AMB_RS08495 0.55 +1.2
1,818,258 + AMB_RS08495 0.55 +0.7
1,818,258 + AMB_RS08495 0.55 -0.6
1,818,258 + AMB_RS08495 0.55 -1.0
1,818,258 + AMB_RS08495 0.55 +0.2
1,818,258 + AMB_RS08495 0.55 -0.2
1,818,258 + AMB_RS08495 0.55 -1.8
1,818,258 + AMB_RS08495 0.55 -1.9
1,818,259 - AMB_RS08495 0.55 -0.2
1,818,259 - AMB_RS08495 0.55 +0.1
1,818,259 - AMB_RS08495 0.55 +0.0
1,818,259 - AMB_RS08495 0.55 -0.3
1,818,259 - AMB_RS08495 0.55 -0.4
1,818,259 - AMB_RS08495 0.55 -3.6
1,818,282 + AMB_RS08495 0.57 +0.5
1,818,282 + AMB_RS08495 0.57 +0.2
1,818,282 + AMB_RS08495 0.57 +0.5
1,818,282 + AMB_RS08495 0.57 -1.9
1,818,282 + AMB_RS08495 0.57 -1.9
1,818,423 + AMB_RS08495 0.67 -0.5
1,818,423 + AMB_RS08495 0.67 -0.9
1,818,447 + AMB_RS08495 0.69 +0.5
1,818,447 + AMB_RS08495 0.69 -0.9
1,818,447 + AMB_RS08495 0.69 +0.9
1,818,510 + AMB_RS08495 0.73 -0.9
1,818,511 - AMB_RS08495 0.73 +0.8
1,818,511 - AMB_RS08495 0.73 +0.2
1,818,511 - AMB_RS08495 0.73 -1.1
1,818,511 - AMB_RS08495 0.73 -1.1
1,818,518 + AMB_RS08495 0.74 +0.1
1,818,518 + AMB_RS08495 0.74 -0.1
1,818,518 + AMB_RS08495 0.74 +0.5
1,818,518 + AMB_RS08495 0.74 -1.3
1,818,518 + AMB_RS08495 0.74 -0.1
1,818,518 + AMB_RS08495 0.74 +1.1
1,818,518 + AMB_RS08495 0.74 -1.9
1,818,518 + AMB_RS08495 0.74 -1.5
1,818,518 + AMB_RS08495 0.74 -0.9
1,818,519 - AMB_RS08495 0.74 +1.0
1,818,519 - AMB_RS08495 0.74 +0.1
1,818,519 - AMB_RS08495 0.74 -2.2
1,818,519 - AMB_RS08495 0.74 -2.4
1,818,519 - AMB_RS08495 0.74 -1.2
1,818,519 - AMB_RS08495 0.74 -1.1
1,818,519 - AMB_RS08495 0.74 +0.7
1,818,519 - AMB_RS08495 0.74 -0.5
1,818,519 - AMB_RS08495 0.74 -1.3
1,818,522 + AMB_RS08495 0.74 -1.5
1,818,522 + AMB_RS08495 0.74 +0.3
1,818,522 + AMB_RS08495 0.74 -0.1
1,818,618 + AMB_RS08495 0.81 +0.0
1,818,618 + AMB_RS08495 0.81 -0.1
1,818,618 + AMB_RS08495 0.81 -0.5
1,818,626 + AMB_RS08495 0.81 -0.0
1,818,627 - AMB_RS08495 0.81 -1.3
1,818,682 - AMB_RS08495 0.85 +0.3
1,818,682 - AMB_RS08495 0.85 +0.3
1,818,702 + AMB_RS08495 0.87 -0.1
1,818,702 + AMB_RS08495 0.87 -1.3
1,818,703 - AMB_RS08495 0.87 +0.6
1,818,893 + +0.5
1,818,894 - +0.5
1,819,189 + -1.7
1,819,223 + AMB_RS08500 0.12 +0.2
1,819,223 + AMB_RS08500 0.12 -0.5
1,819,224 - AMB_RS08500 0.12 +0.6
1,819,224 - AMB_RS08500 0.12 -0.9
1,819,224 - AMB_RS08500 0.12 +0.0
1,819,224 - AMB_RS08500 0.12 +1.5
1,819,224 - AMB_RS08500 0.12 -1.1
1,819,225 + AMB_RS08500 0.12 -2.2
1,819,226 - AMB_RS08500 0.12 -2.6
1,819,226 - AMB_RS08500 0.12 +0.4
1,819,226 - AMB_RS08500 0.12 -0.3
1,819,226 - AMB_RS08500 0.12 -0.5
1,819,226 - AMB_RS08500 0.12 -0.1
1,819,336 + AMB_RS08500 0.26 +1.3
1,819,336 + AMB_RS08500 0.26 +0.7
1,819,337 - AMB_RS08500 0.26 -0.5
1,819,337 - AMB_RS08500 0.26 -0.4

Or see this region's nucleotide sequence