Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08370

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS08365 and AMB_RS08370 are separated by 65 nucleotidesAMB_RS08370 and AMB_RS08375 are separated by 417 nucleotides AMB_RS08365: AMB_RS08365 - CoA transferase, at 1,789,934 to 1,791,145 _RS08365 AMB_RS08370: AMB_RS08370 - MFS transporter, at 1,791,211 to 1,792,548 _RS08370 AMB_RS08375: AMB_RS08375 - hypothetical protein, at 1,792,966 to 1,794,348 _RS08375 Position (kb) 1791 1792 1793Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1791.296 kb on + strandat 1791.296 kb on + strandat 1791.296 kb on + strandat 1791.296 kb on + strandat 1791.297 kb on - strandat 1791.297 kb on - strandat 1791.297 kb on - strandat 1791.297 kb on - strandat 1791.302 kb on + strandat 1791.302 kb on + strandat 1791.303 kb on - strandat 1791.348 kb on - strand, within AMB_RS08370at 1791.348 kb on - strand, within AMB_RS08370at 1791.461 kb on + strand, within AMB_RS08370at 1791.461 kb on + strand, within AMB_RS08370at 1791.462 kb on - strand, within AMB_RS08370at 1791.583 kb on + strand, within AMB_RS08370at 1791.584 kb on - strand, within AMB_RS08370at 1791.644 kb on + strand, within AMB_RS08370at 1791.644 kb on + strand, within AMB_RS08370at 1791.644 kb on + strand, within AMB_RS08370at 1791.644 kb on + strand, within AMB_RS08370at 1791.644 kb on + strand, within AMB_RS08370at 1791.644 kb on + strand, within AMB_RS08370at 1791.644 kb on + strand, within AMB_RS08370at 1791.645 kb on - strand, within AMB_RS08370at 1791.645 kb on - strand, within AMB_RS08370at 1791.645 kb on - strand, within AMB_RS08370at 1791.713 kb on + strand, within AMB_RS08370at 1791.714 kb on - strand, within AMB_RS08370at 1791.714 kb on - strand, within AMB_RS08370at 1791.714 kb on - strand, within AMB_RS08370at 1791.725 kb on + strand, within AMB_RS08370at 1791.725 kb on + strand, within AMB_RS08370at 1791.725 kb on + strand, within AMB_RS08370at 1791.725 kb on + strand, within AMB_RS08370at 1791.725 kb on + strand, within AMB_RS08370at 1791.726 kb on - strand, within AMB_RS08370at 1791.726 kb on - strand, within AMB_RS08370at 1791.726 kb on - strand, within AMB_RS08370at 1791.726 kb on - strand, within AMB_RS08370at 1791.726 kb on - strand, within AMB_RS08370at 1791.740 kb on + strand, within AMB_RS08370at 1791.740 kb on + strand, within AMB_RS08370at 1791.740 kb on + strand, within AMB_RS08370at 1791.740 kb on + strand, within AMB_RS08370at 1791.741 kb on - strand, within AMB_RS08370at 1791.741 kb on - strand, within AMB_RS08370at 1791.741 kb on - strand, within AMB_RS08370at 1791.741 kb on - strand, within AMB_RS08370at 1791.887 kb on + strand, within AMB_RS08370at 1791.887 kb on + strand, within AMB_RS08370at 1791.887 kb on + strand, within AMB_RS08370at 1791.888 kb on - strand, within AMB_RS08370at 1791.888 kb on - strand, within AMB_RS08370at 1791.888 kb on - strand, within AMB_RS08370at 1791.888 kb on - strand, within AMB_RS08370at 1792.031 kb on + strand, within AMB_RS08370at 1792.032 kb on - strand, within AMB_RS08370at 1792.046 kb on + strand, within AMB_RS08370at 1792.046 kb on + strand, within AMB_RS08370at 1792.047 kb on - strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.085 kb on + strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.086 kb on - strand, within AMB_RS08370at 1792.103 kb on + strand, within AMB_RS08370at 1792.377 kb on - strand, within AMB_RS08370at 1792.388 kb on + strand, within AMB_RS08370at 1792.406 kb on + strand, within AMB_RS08370at 1792.412 kb on + strand, within AMB_RS08370at 1792.413 kb on - strand, within AMB_RS08370at 1792.413 kb on - strand, within AMB_RS08370at 1792.421 kb on + strandat 1792.425 kb on - strandat 1792.542 kb on + strandat 1792.543 kb on - strandat 1792.928 kb on + strandat 1792.928 kb on + strandat 1792.964 kb on + strandat 1792.964 kb on + strandat 1792.965 kb on - strandat 1792.965 kb on - strandat 1792.965 kb on - strandat 1792.965 kb on - strandat 1793.047 kb on - strandat 1793.101 kb on + strandat 1793.101 kb on + strandat 1793.102 kb on - strandat 1793.102 kb on - strandat 1793.104 kb on + strandat 1793.104 kb on + strandat 1793.104 kb on + strandat 1793.105 kb on - strand, within AMB_RS08375at 1793.105 kb on - strand, within AMB_RS08375at 1793.105 kb on - strand, within AMB_RS08375at 1793.105 kb on - strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.119 kb on + strand, within AMB_RS08375at 1793.120 kb on - strand, within AMB_RS08375at 1793.407 kb on + strand, within AMB_RS08375at 1793.407 kb on + strand, within AMB_RS08375at 1793.407 kb on + strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.408 kb on - strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.461 kb on + strand, within AMB_RS08375at 1793.494 kb on + strand, within AMB_RS08375at 1793.494 kb on + strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375at 1793.495 kb on - strand, within AMB_RS08375

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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1,791,296 + -0.0
1,791,296 + +0.4
1,791,296 + +0.8
1,791,296 + +0.0
1,791,297 - -2.0
1,791,297 - -0.3
1,791,297 - -0.9
1,791,297 - -0.1
1,791,302 + +0.1
1,791,302 + +0.4
1,791,303 - -2.1
1,791,348 - AMB_RS08370 0.10 +0.5
1,791,348 - AMB_RS08370 0.10 -0.4
1,791,461 + AMB_RS08370 0.19 +0.1
1,791,461 + AMB_RS08370 0.19 -0.0
1,791,462 - AMB_RS08370 0.19 +0.8
1,791,583 + AMB_RS08370 0.28 -1.0
1,791,584 - AMB_RS08370 0.28 -1.9
1,791,644 + AMB_RS08370 0.32 -0.4
1,791,644 + AMB_RS08370 0.32 +1.5
1,791,644 + AMB_RS08370 0.32 -3.8
1,791,644 + AMB_RS08370 0.32 -3.2
1,791,644 + AMB_RS08370 0.32 -2.2
1,791,644 + AMB_RS08370 0.32 +0.0
1,791,644 + AMB_RS08370 0.32 -1.1
1,791,645 - AMB_RS08370 0.32 -0.1
1,791,645 - AMB_RS08370 0.32 -1.9
1,791,645 - AMB_RS08370 0.32 +0.2
1,791,713 + AMB_RS08370 0.38 -2.3
1,791,714 - AMB_RS08370 0.38 -1.5
1,791,714 - AMB_RS08370 0.38 -2.0
1,791,714 - AMB_RS08370 0.38 +0.2
1,791,725 + AMB_RS08370 0.38 -1.0
1,791,725 + AMB_RS08370 0.38 +0.4
1,791,725 + AMB_RS08370 0.38 -0.1
1,791,725 + AMB_RS08370 0.38 -2.3
1,791,725 + AMB_RS08370 0.38 -0.9
1,791,726 - AMB_RS08370 0.38 -1.0
1,791,726 - AMB_RS08370 0.38 -0.5
1,791,726 - AMB_RS08370 0.38 +1.8
1,791,726 - AMB_RS08370 0.38 +0.0
1,791,726 - AMB_RS08370 0.38 +0.1
1,791,740 + AMB_RS08370 0.40 -0.1
1,791,740 + AMB_RS08370 0.40 -1.1
1,791,740 + AMB_RS08370 0.40 -0.5
1,791,740 + AMB_RS08370 0.40 -0.9
1,791,741 - AMB_RS08370 0.40 -0.0
1,791,741 - AMB_RS08370 0.40 -2.4
1,791,741 - AMB_RS08370 0.40 +0.5
1,791,741 - AMB_RS08370 0.40 -0.0
1,791,887 + AMB_RS08370 0.51 -0.1
1,791,887 + AMB_RS08370 0.51 -0.3
1,791,887 + AMB_RS08370 0.51 -0.1
1,791,888 - AMB_RS08370 0.51 +0.0
1,791,888 - AMB_RS08370 0.51 -1.1
1,791,888 - AMB_RS08370 0.51 +1.4
1,791,888 - AMB_RS08370 0.51 -1.1
1,792,031 + AMB_RS08370 0.61 -2.6
1,792,032 - AMB_RS08370 0.61 -0.0
1,792,046 + AMB_RS08370 0.62 -1.1
1,792,046 + AMB_RS08370 0.62 -0.2
1,792,047 - AMB_RS08370 0.62 -0.3
1,792,085 + AMB_RS08370 0.65 +0.1
1,792,085 + AMB_RS08370 0.65 +0.5
1,792,085 + AMB_RS08370 0.65 -0.9
1,792,085 + AMB_RS08370 0.65 -1.5
1,792,085 + AMB_RS08370 0.65 -0.5
1,792,085 + AMB_RS08370 0.65 +0.5
1,792,085 + AMB_RS08370 0.65 -0.1
1,792,086 - AMB_RS08370 0.65 +0.5
1,792,086 - AMB_RS08370 0.65 -0.6
1,792,086 - AMB_RS08370 0.65 -0.9
1,792,086 - AMB_RS08370 0.65 -0.5
1,792,086 - AMB_RS08370 0.65 -2.2
1,792,086 - AMB_RS08370 0.65 +0.1
1,792,103 + AMB_RS08370 0.67 +0.0
1,792,377 - AMB_RS08370 0.87 -3.7
1,792,388 + AMB_RS08370 0.88 -0.5
1,792,406 + AMB_RS08370 0.89 +0.0
1,792,412 + AMB_RS08370 0.90 -0.4
1,792,413 - AMB_RS08370 0.90 -0.5
1,792,413 - AMB_RS08370 0.90 -0.5
1,792,421 + -0.4
1,792,425 - -3.2
1,792,542 + +0.2
1,792,543 - +0.0
1,792,928 + -2.6
1,792,928 + -1.3
1,792,964 + -1.0
1,792,964 + +0.3
1,792,965 - -0.2
1,792,965 - +1.5
1,792,965 - -0.1
1,792,965 - +0.9
1,793,047 - +0.2
1,793,101 + -0.4
1,793,101 + -0.6
1,793,102 - -0.9
1,793,102 - -0.1
1,793,104 + -2.4
1,793,104 + -1.5
1,793,104 + +0.5
1,793,105 - AMB_RS08375 0.10 -0.1
1,793,105 - AMB_RS08375 0.10 -1.5
1,793,105 - AMB_RS08375 0.10 -1.3
1,793,105 - AMB_RS08375 0.10 -0.2
1,793,119 + AMB_RS08375 0.11 -0.5
1,793,119 + AMB_RS08375 0.11 +0.3
1,793,119 + AMB_RS08375 0.11 -1.1
1,793,119 + AMB_RS08375 0.11 -0.9
1,793,119 + AMB_RS08375 0.11 +0.5
1,793,120 - AMB_RS08375 0.11 -0.5
1,793,407 + AMB_RS08375 0.32 -1.9
1,793,407 + AMB_RS08375 0.32 -0.9
1,793,407 + AMB_RS08375 0.32 +0.4
1,793,408 - AMB_RS08375 0.32 -0.1
1,793,408 - AMB_RS08375 0.32 +1.0
1,793,408 - AMB_RS08375 0.32 -1.9
1,793,408 - AMB_RS08375 0.32 -1.3
1,793,408 - AMB_RS08375 0.32 -0.5
1,793,461 + AMB_RS08375 0.36 +0.4
1,793,461 + AMB_RS08375 0.36 -1.2
1,793,461 + AMB_RS08375 0.36 +0.6
1,793,494 + AMB_RS08375 0.38 +3.5
1,793,494 + AMB_RS08375 0.38 +0.8
1,793,495 - AMB_RS08375 0.38 -0.0
1,793,495 - AMB_RS08375 0.38 +0.5
1,793,495 - AMB_RS08375 0.38 -1.3
1,793,495 - AMB_RS08375 0.38 +0.7

Or see this region's nucleotide sequence