Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07925

Experiment: 150_an_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS07915 and AMB_RS07920 are separated by 180 nucleotidesAMB_RS07920 and AMB_RS07925 are separated by 100 nucleotidesAMB_RS07925 and AMB_RS07930 are separated by 96 nucleotides AMB_RS07915: AMB_RS07915 - hypothetical protein, at 1,698,742 to 1,699,971 _RS07915 AMB_RS07920: AMB_RS07920 - N-acetyltransferase, at 1,700,152 to 1,700,670 _RS07920 AMB_RS07925: AMB_RS07925 - nitrogenase molybdenum-iron protein subunit beta, at 1,700,771 to 1,702,306 _RS07925 AMB_RS07930: AMB_RS07930 - nitrogenase molybdenum-iron protein alpha chain, at 1,702,403 to 1,703,860 _RS07930 Position (kb) 1700 1701 1702 1703Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.772 kb on + strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.773 kb on - strand, within AMB_RS07915at 1699.854 kb on - strandat 1699.854 kb on - strandat 1700.085 kb on - strandat 1700.121 kb on + strandat 1700.356 kb on + strand, within AMB_RS07920at 1700.356 kb on + strand, within AMB_RS07920at 1700.356 kb on + strand, within AMB_RS07920at 1700.357 kb on - strand, within AMB_RS07920at 1700.365 kb on + strand, within AMB_RS07920at 1700.366 kb on - strand, within AMB_RS07920at 1700.366 kb on - strand, within AMB_RS07920at 1700.787 kb on + strandat 1700.788 kb on - strandat 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.955 kb on + strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.956 kb on - strand, within AMB_RS07925at 1700.964 kb on + strand, within AMB_RS07925at 1701.199 kb on + strand, within AMB_RS07925at 1701.351 kb on + strand, within AMB_RS07925at 1701.352 kb on - strand, within AMB_RS07925at 1701.352 kb on - strand, within AMB_RS07925at 1701.390 kb on + strand, within AMB_RS07925at 1701.390 kb on + strand, within AMB_RS07925at 1701.390 kb on + strand, within AMB_RS07925at 1701.390 kb on + strand, within AMB_RS07925at 1701.391 kb on - strand, within AMB_RS07925at 1701.391 kb on - strand, within AMB_RS07925at 1701.391 kb on - strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.414 kb on + strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.415 kb on - strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.486 kb on + strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.487 kb on - strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.549 kb on + strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925at 1701.550 kb on - strand, within AMB_RS07925at 1701.687 kb on + strand, within AMB_RS07925at 1701.882 kb on + strand, within AMB_RS07925at 1701.882 kb on + strand, within AMB_RS07925at 1701.882 kb on + strand, within AMB_RS07925at 1701.882 kb on + strand, within AMB_RS07925at 1701.883 kb on - strand, within AMB_RS07925at 1702.015 kb on - strand, within AMB_RS07925at 1702.044 kb on + strand, within AMB_RS07925at 1702.044 kb on + strand, within AMB_RS07925at 1702.044 kb on + strand, within AMB_RS07925at 1702.045 kb on - strand, within AMB_RS07925at 1702.045 kb on - strand, within AMB_RS07925at 1702.171 kb on - strandat 1702.215 kb on + strandat 1702.216 kb on - strandat 1702.248 kb on + strandat 1702.320 kb on + strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.321 kb on - strandat 1702.372 kb on + strandat 1702.405 kb on - strandat 1702.405 kb on - strandat 1702.405 kb on - strandat 1702.494 kb on + strandat 1702.494 kb on + strandat 1702.494 kb on + strandat 1702.494 kb on + strandat 1702.494 kb on + strandat 1702.515 kb on + strandat 1702.566 kb on + strand, within AMB_RS07930at 1702.566 kb on + strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.567 kb on - strand, within AMB_RS07930at 1702.650 kb on + strand, within AMB_RS07930at 1702.674 kb on + strand, within AMB_RS07930at 1702.674 kb on + strand, within AMB_RS07930at 1702.674 kb on + strand, within AMB_RS07930at 1702.675 kb on - strand, within AMB_RS07930at 1702.675 kb on - strand, within AMB_RS07930at 1702.675 kb on - strand, within AMB_RS07930at 1702.692 kb on + strand, within AMB_RS07930at 1702.693 kb on - strand, within AMB_RS07930at 1702.693 kb on - strand, within AMB_RS07930at 1702.693 kb on - strand, within AMB_RS07930at 1702.693 kb on - strand, within AMB_RS07930at 1702.752 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.791 kb on + strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.792 kb on - strand, within AMB_RS07930at 1702.860 kb on + strand, within AMB_RS07930at 1702.860 kb on + strand, within AMB_RS07930at 1702.860 kb on + strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.861 kb on - strand, within AMB_RS07930at 1702.962 kb on + strand, within AMB_RS07930at 1702.963 kb on - strand, within AMB_RS07930at 1702.963 kb on - strand, within AMB_RS07930at 1702.983 kb on + strand, within AMB_RS07930at 1702.984 kb on - strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.010 kb on + strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.011 kb on - strand, within AMB_RS07930at 1703.166 kb on + strand, within AMB_RS07930at 1703.166 kb on + strand, within AMB_RS07930at 1703.166 kb on + strand, within AMB_RS07930at 1703.167 kb on - strand, within AMB_RS07930at 1703.167 kb on - strand, within AMB_RS07930at 1703.191 kb on - strand, within AMB_RS07930

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
remove
1,699,772 + AMB_RS07915 0.84 -0.3
1,699,772 + AMB_RS07915 0.84 -0.5
1,699,772 + AMB_RS07915 0.84 -1.5
1,699,772 + AMB_RS07915 0.84 -0.4
1,699,772 + AMB_RS07915 0.84 +0.6
1,699,772 + AMB_RS07915 0.84 -0.5
1,699,772 + AMB_RS07915 0.84 +0.5
1,699,772 + AMB_RS07915 0.84 -1.3
1,699,772 + AMB_RS07915 0.84 -0.5
1,699,773 - AMB_RS07915 0.84 -1.5
1,699,773 - AMB_RS07915 0.84 -2.9
1,699,773 - AMB_RS07915 0.84 +1.5
1,699,854 - -0.7
1,699,854 - -0.1
1,700,085 - -0.6
1,700,121 + -0.5
1,700,356 + AMB_RS07920 0.39 -0.9
1,700,356 + AMB_RS07920 0.39 -0.0
1,700,356 + AMB_RS07920 0.39 +0.3
1,700,357 - AMB_RS07920 0.39 -0.0
1,700,365 + AMB_RS07920 0.41 +0.3
1,700,366 - AMB_RS07920 0.41 +0.3
1,700,366 - AMB_RS07920 0.41 +0.5
1,700,787 + -2.3
1,700,788 - +0.0
1,700,955 + AMB_RS07925 0.12 -2.6
1,700,955 + AMB_RS07925 0.12 +0.1
1,700,955 + AMB_RS07925 0.12 -1.5
1,700,955 + AMB_RS07925 0.12 -1.3
1,700,956 - AMB_RS07925 0.12 -0.3
1,700,956 - AMB_RS07925 0.12 -0.3
1,700,956 - AMB_RS07925 0.12 -2.5
1,700,956 - AMB_RS07925 0.12 -0.0
1,700,956 - AMB_RS07925 0.12 -1.7
1,700,964 + AMB_RS07925 0.13 +0.2
1,701,199 + AMB_RS07925 0.28 -0.6
1,701,351 + AMB_RS07925 0.38 +0.6
1,701,352 - AMB_RS07925 0.38 +0.2
1,701,352 - AMB_RS07925 0.38 -2.1
1,701,390 + AMB_RS07925 0.40 -1.7
1,701,390 + AMB_RS07925 0.40 -0.2
1,701,390 + AMB_RS07925 0.40 -1.8
1,701,390 + AMB_RS07925 0.40 -2.1
1,701,391 - AMB_RS07925 0.40 -0.0
1,701,391 - AMB_RS07925 0.40 -2.1
1,701,391 - AMB_RS07925 0.40 -0.5
1,701,414 + AMB_RS07925 0.42 -0.1
1,701,414 + AMB_RS07925 0.42 -0.5
1,701,414 + AMB_RS07925 0.42 -1.7
1,701,414 + AMB_RS07925 0.42 -0.9
1,701,415 - AMB_RS07925 0.42 -0.5
1,701,415 - AMB_RS07925 0.42 -0.1
1,701,415 - AMB_RS07925 0.42 -0.2
1,701,415 - AMB_RS07925 0.42 -2.0
1,701,486 + AMB_RS07925 0.47 -0.9
1,701,486 + AMB_RS07925 0.47 +0.6
1,701,486 + AMB_RS07925 0.47 -2.2
1,701,487 - AMB_RS07925 0.47 +0.2
1,701,487 - AMB_RS07925 0.47 +0.4
1,701,487 - AMB_RS07925 0.47 -0.8
1,701,487 - AMB_RS07925 0.47 +1.5
1,701,487 - AMB_RS07925 0.47 -0.8
1,701,549 + AMB_RS07925 0.51 -2.4
1,701,549 + AMB_RS07925 0.51 -0.3
1,701,549 + AMB_RS07925 0.51 -1.6
1,701,550 - AMB_RS07925 0.51 -1.5
1,701,550 - AMB_RS07925 0.51 +0.4
1,701,550 - AMB_RS07925 0.51 -0.9
1,701,687 + AMB_RS07925 0.60 +1.5
1,701,882 + AMB_RS07925 0.72 -0.3
1,701,882 + AMB_RS07925 0.72 -0.9
1,701,882 + AMB_RS07925 0.72 -2.3
1,701,882 + AMB_RS07925 0.72 -0.3
1,701,883 - AMB_RS07925 0.72 -2.5
1,702,015 - AMB_RS07925 0.81 +0.5
1,702,044 + AMB_RS07925 0.83 -0.9
1,702,044 + AMB_RS07925 0.83 -0.2
1,702,044 + AMB_RS07925 0.83 -1.9
1,702,045 - AMB_RS07925 0.83 +0.7
1,702,045 - AMB_RS07925 0.83 -0.9
1,702,171 - +0.9
1,702,215 + -1.1
1,702,216 - +0.0
1,702,248 + -0.1
1,702,320 + +0.5
1,702,321 - -1.4
1,702,321 - -0.8
1,702,321 - -2.2
1,702,321 - -0.3
1,702,321 - +0.5
1,702,321 - -0.5
1,702,372 + +0.2
1,702,405 - -0.8
1,702,405 - -1.0
1,702,405 - -0.9
1,702,494 + +0.1
1,702,494 + -1.1
1,702,494 + +1.5
1,702,494 + +0.4
1,702,494 + +0.6
1,702,515 + -0.9
1,702,566 + AMB_RS07930 0.11 -0.5
1,702,566 + AMB_RS07930 0.11 -0.7
1,702,567 - AMB_RS07930 0.11 -0.2
1,702,567 - AMB_RS07930 0.11 -1.1
1,702,567 - AMB_RS07930 0.11 +0.2
1,702,567 - AMB_RS07930 0.11 -0.1
1,702,567 - AMB_RS07930 0.11 -0.9
1,702,650 + AMB_RS07930 0.17 +0.1
1,702,674 + AMB_RS07930 0.19 -1.1
1,702,674 + AMB_RS07930 0.19 +0.8
1,702,674 + AMB_RS07930 0.19 +2.2
1,702,675 - AMB_RS07930 0.19 +0.6
1,702,675 - AMB_RS07930 0.19 +1.2
1,702,675 - AMB_RS07930 0.19 -0.5
1,702,692 + AMB_RS07930 0.20 -1.9
1,702,693 - AMB_RS07930 0.20 -0.9
1,702,693 - AMB_RS07930 0.20 +0.7
1,702,693 - AMB_RS07930 0.20 -0.5
1,702,693 - AMB_RS07930 0.20 -0.1
1,702,752 + AMB_RS07930 0.24 +0.2
1,702,791 + AMB_RS07930 0.27 +0.6
1,702,791 + AMB_RS07930 0.27 -0.1
1,702,791 + AMB_RS07930 0.27 -0.1
1,702,791 + AMB_RS07930 0.27 -0.1
1,702,791 + AMB_RS07930 0.27 -1.5
1,702,791 + AMB_RS07930 0.27 -0.6
1,702,791 + AMB_RS07930 0.27 -0.3
1,702,791 + AMB_RS07930 0.27 -0.0
1,702,791 + AMB_RS07930 0.27 -0.3
1,702,791 + AMB_RS07930 0.27 -0.9
1,702,791 + AMB_RS07930 0.27 -1.5
1,702,792 - AMB_RS07930 0.27 +0.5
1,702,792 - AMB_RS07930 0.27 -1.1
1,702,792 - AMB_RS07930 0.27 -0.1
1,702,792 - AMB_RS07930 0.27 +0.6
1,702,792 - AMB_RS07930 0.27 +1.5
1,702,792 - AMB_RS07930 0.27 -0.4
1,702,792 - AMB_RS07930 0.27 -0.3
1,702,792 - AMB_RS07930 0.27 +1.3
1,702,792 - AMB_RS07930 0.27 -1.0
1,702,860 + AMB_RS07930 0.31 -3.9
1,702,860 + AMB_RS07930 0.31 -0.0
1,702,860 + AMB_RS07930 0.31 -0.2
1,702,861 - AMB_RS07930 0.31 +0.1
1,702,861 - AMB_RS07930 0.31 +0.1
1,702,861 - AMB_RS07930 0.31 -2.5
1,702,861 - AMB_RS07930 0.31 -0.5
1,702,861 - AMB_RS07930 0.31 -0.2
1,702,861 - AMB_RS07930 0.31 -0.5
1,702,861 - AMB_RS07930 0.31 -0.9
1,702,962 + AMB_RS07930 0.38 +0.2
1,702,963 - AMB_RS07930 0.38 +0.0
1,702,963 - AMB_RS07930 0.38 -0.5
1,702,983 + AMB_RS07930 0.40 +0.5
1,702,984 - AMB_RS07930 0.40 -2.6
1,703,010 + AMB_RS07930 0.42 -1.3
1,703,010 + AMB_RS07930 0.42 +0.3
1,703,010 + AMB_RS07930 0.42 -0.2
1,703,010 + AMB_RS07930 0.42 -0.5
1,703,010 + AMB_RS07930 0.42 -0.9
1,703,010 + AMB_RS07930 0.42 -0.9
1,703,010 + AMB_RS07930 0.42 +0.1
1,703,011 - AMB_RS07930 0.42 +0.5
1,703,011 - AMB_RS07930 0.42 +0.9
1,703,011 - AMB_RS07930 0.42 -0.9
1,703,011 - AMB_RS07930 0.42 +0.1
1,703,011 - AMB_RS07930 0.42 +2.1
1,703,011 - AMB_RS07930 0.42 +1.8
1,703,166 + AMB_RS07930 0.52 -0.4
1,703,166 + AMB_RS07930 0.52 +0.5
1,703,166 + AMB_RS07930 0.52 -0.0
1,703,167 - AMB_RS07930 0.52 -0.9
1,703,167 - AMB_RS07930 0.52 +0.3
1,703,191 - AMB_RS07930 0.54 -2.1

Or see this region's nucleotide sequence