Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07545

Experiment: 150_an_nonmag_3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS07540 and AMB_RS07545 overlap by 1 nucleotidesAMB_RS07545 and AMB_RS07550 are separated by 59 nucleotidesAMB_RS07550 and AMB_RS07555 are separated by 45 nucleotides AMB_RS07540: AMB_RS07540 - reverse transcriptase, at 1,632,862 to 1,634,274 _RS07540 AMB_RS07545: AMB_RS07545 - four helix bundle protein, at 1,634,274 to 1,634,627 _RS07545 AMB_RS07550: AMB_RS07550 - DUF1566 domain-containing protein, at 1,634,687 to 1,635,238 _RS07550 AMB_RS07555: AMB_RS07555 - DUF1566 domain-containing protein, at 1,635,284 to 1,635,856 _RS07555 Position (kb) 1634 1635Strain fitness (log2 ratio) -3 -2 -1 0 1at 1633.274 kb on + strand, within AMB_RS07540at 1633.274 kb on + strand, within AMB_RS07540at 1633.274 kb on + strand, within AMB_RS07540at 1633.275 kb on - strand, within AMB_RS07540at 1633.325 kb on + strand, within AMB_RS07540at 1633.325 kb on + strand, within AMB_RS07540at 1633.586 kb on + strand, within AMB_RS07540at 1633.586 kb on + strand, within AMB_RS07540at 1633.586 kb on + strand, within AMB_RS07540at 1633.586 kb on + strand, within AMB_RS07540at 1633.625 kb on - strand, within AMB_RS07540at 1633.625 kb on - strand, within AMB_RS07540at 1633.652 kb on + strand, within AMB_RS07540at 1633.730 kb on + strand, within AMB_RS07540at 1633.730 kb on + strand, within AMB_RS07540at 1633.934 kb on + strand, within AMB_RS07540at 1633.934 kb on + strand, within AMB_RS07540at 1633.937 kb on + strand, within AMB_RS07540at 1633.937 kb on + strand, within AMB_RS07540at 1633.937 kb on + strand, within AMB_RS07540at 1633.937 kb on + strand, within AMB_RS07540at 1633.937 kb on + strand, within AMB_RS07540at 1634.098 kb on + strand, within AMB_RS07540at 1634.176 kb on + strandat 1634.290 kb on + strandat 1634.587 kb on + strand, within AMB_RS07545at 1634.587 kb on + strand, within AMB_RS07545at 1634.587 kb on + strand, within AMB_RS07545at 1634.588 kb on - strand, within AMB_RS07545at 1634.757 kb on + strand, within AMB_RS07550at 1634.757 kb on + strand, within AMB_RS07550at 1634.760 kb on + strand, within AMB_RS07550at 1634.760 kb on + strand, within AMB_RS07550at 1634.760 kb on + strand, within AMB_RS07550at 1634.760 kb on + strand, within AMB_RS07550at 1634.766 kb on + strand, within AMB_RS07550at 1634.793 kb on + strand, within AMB_RS07550at 1634.812 kb on - strand, within AMB_RS07550at 1635.151 kb on + strand, within AMB_RS07550at 1635.153 kb on + strand, within AMB_RS07550at 1635.345 kb on + strand, within AMB_RS07555at 1635.345 kb on + strand, within AMB_RS07555at 1635.387 kb on + strand, within AMB_RS07555

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
remove
1,633,274 + AMB_RS07540 0.29 +1.7
1,633,274 + AMB_RS07540 0.29 +0.3
1,633,274 + AMB_RS07540 0.29 -1.7
1,633,275 - AMB_RS07540 0.29 -2.1
1,633,325 + AMB_RS07540 0.33 -1.1
1,633,325 + AMB_RS07540 0.33 -0.5
1,633,586 + AMB_RS07540 0.51 +0.1
1,633,586 + AMB_RS07540 0.51 +1.0
1,633,586 + AMB_RS07540 0.51 -1.5
1,633,586 + AMB_RS07540 0.51 +0.4
1,633,625 - AMB_RS07540 0.54 -0.9
1,633,625 - AMB_RS07540 0.54 -3.1
1,633,652 + AMB_RS07540 0.56 -0.9
1,633,730 + AMB_RS07540 0.61 -1.1
1,633,730 + AMB_RS07540 0.61 -0.1
1,633,934 + AMB_RS07540 0.76 -0.8
1,633,934 + AMB_RS07540 0.76 -0.7
1,633,937 + AMB_RS07540 0.76 +0.6
1,633,937 + AMB_RS07540 0.76 +0.3
1,633,937 + AMB_RS07540 0.76 -0.0
1,633,937 + AMB_RS07540 0.76 -1.1
1,633,937 + AMB_RS07540 0.76 +0.1
1,634,098 + AMB_RS07540 0.87 -1.3
1,634,176 + -0.1
1,634,290 + -0.9
1,634,587 + AMB_RS07545 0.88 -0.4
1,634,587 + AMB_RS07545 0.88 +0.1
1,634,587 + AMB_RS07545 0.88 -3.2
1,634,588 - AMB_RS07545 0.89 -1.3
1,634,757 + AMB_RS07550 0.13 -1.3
1,634,757 + AMB_RS07550 0.13 +0.4
1,634,760 + AMB_RS07550 0.13 -0.1
1,634,760 + AMB_RS07550 0.13 -1.3
1,634,760 + AMB_RS07550 0.13 +0.3
1,634,760 + AMB_RS07550 0.13 +0.3
1,634,766 + AMB_RS07550 0.14 -2.2
1,634,793 + AMB_RS07550 0.19 -0.5
1,634,812 - AMB_RS07550 0.23 -0.0
1,635,151 + AMB_RS07550 0.84 -0.4
1,635,153 + AMB_RS07550 0.84 +0.2
1,635,345 + AMB_RS07555 0.11 -0.5
1,635,345 + AMB_RS07555 0.11 -0.5
1,635,387 + AMB_RS07555 0.18 -0.9

Or see this region's nucleotide sequence