Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04605

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04600 and AMB_RS04605 are separated by 825 nucleotidesAMB_RS04605 and AMB_RS04610 are separated by 98 nucleotidesAMB_RS04610 and AMB_RS04615 are separated by 45 nucleotidesAMB_RS04615 and AMB_RS04620 are separated by 243 nucleotides AMB_RS04600: AMB_RS04600 - membrane protein, at 962,681 to 964,069 _RS04600 AMB_RS04605: AMB_RS04605 - 16S ribosomal RNA, at 964,895 to 966,392 _RS04605 AMB_RS04610: AMB_RS04610 - tRNA-Ile, at 966,491 to 966,567 _RS04610 AMB_RS04615: AMB_RS04615 - tRNA-Ala, at 966,613 to 966,688 _RS04615 AMB_RS04620: AMB_RS04620 - 23S ribosomal RNA, at 966,932 to 969,685 _RS04620 Position (kb) 964 965 966 967Strain fitness (log2 ratio) -2 -1 0 1at 964.088 kb on - strandat 964.088 kb on - strandat 964.091 kb on - strandat 964.091 kb on - strandat 964.091 kb on - strandat 964.091 kb on - strandat 964.091 kb on - strandat 964.091 kb on - strandat 964.153 kb on - strandat 964.153 kb on - strandat 964.155 kb on - strandat 964.155 kb on - strandat 964.225 kb on + strandat 964.225 kb on + strandat 964.226 kb on - strandat 964.226 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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964,088 - -0.8
964,088 - -0.8
964,091 - -1.4
964,091 - +0.5
964,091 - +1.0
964,091 - +0.3
964,091 - +0.3
964,091 - -1.9
964,153 - -0.1
964,153 - +0.2
964,155 - +0.3
964,155 - +0.1
964,225 + -0.1
964,225 + -2.1
964,226 - -1.7
964,226 - -0.5

Or see this region's nucleotide sequence