Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04270 and AMB_RS04275 are separated by 1 nucleotides AMB_RS04275 and AMB_RS04280 are separated by 37 nucleotides AMB_RS04280 and AMB_RS04285 are separated by 130 nucleotides
AMB_RS04270: AMB_RS04270 - insulinase family protein, at 896,604 to 898,001
_RS04270
AMB_RS04275: AMB_RS04275 - insulinase family protein, at 898,003 to 899,415
_RS04275
AMB_RS04280: AMB_RS04280 - polyhydroxyalkanoate synthesis repressor PhaR, at 899,453 to 900,016
_RS04280
AMB_RS04285: AMB_RS04285 - hypothetical protein, at 900,147 to 900,596
_RS04285
Position (kb) 898
899
900 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 897.123 kb on + strand, within AMB_RS04270 at 897.123 kb on + strand, within AMB_RS04270 at 897.124 kb on - strand, within AMB_RS04270 at 897.295 kb on - strand, within AMB_RS04270 at 897.295 kb on - strand, within AMB_RS04270 at 897.298 kb on - strand, within AMB_RS04270 at 897.420 kb on + strand, within AMB_RS04270 at 897.463 kb on - strand, within AMB_RS04270 at 897.516 kb on + strand, within AMB_RS04270 at 897.517 kb on - strand, within AMB_RS04270 at 897.567 kb on + strand, within AMB_RS04270 at 898.031 kb on + strand at 898.032 kb on - strand at 898.963 kb on + strand, within AMB_RS04275 at 898.963 kb on + strand, within AMB_RS04275 at 899.047 kb on + strand, within AMB_RS04275 at 899.059 kb on + strand, within AMB_RS04275 at 899.060 kb on - strand, within AMB_RS04275 at 899.200 kb on + strand, within AMB_RS04275 at 899.201 kb on - strand, within AMB_RS04275 at 899.454 kb on + strand at 899.455 kb on - strand at 899.455 kb on - strand at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.553 kb on + strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.554 kb on - strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.659 kb on + strand, within AMB_RS04280 at 899.660 kb on - strand, within AMB_RS04280 at 899.660 kb on - strand, within AMB_RS04280 at 899.660 kb on - strand, within AMB_RS04280 at 899.660 kb on - strand, within AMB_RS04280 at 899.660 kb on - strand, within AMB_RS04280 at 899.660 kb on - strand, within AMB_RS04280 at 899.660 kb on - strand, within AMB_RS04280 at 899.661 kb on + strand, within AMB_RS04280 at 899.661 kb on + strand, within AMB_RS04280 at 899.661 kb on + strand, within AMB_RS04280 at 899.662 kb on - strand, within AMB_RS04280 at 899.662 kb on - strand, within AMB_RS04280 at 899.662 kb on - strand, within AMB_RS04280 at 899.662 kb on - strand, within AMB_RS04280 at 899.748 kb on + strand, within AMB_RS04280 at 899.848 kb on + strand, within AMB_RS04280 at 899.929 kb on - strand, within AMB_RS04280 at 899.968 kb on - strand at 900.073 kb on + strand at 900.073 kb on + strand at 900.074 kb on - strand at 900.074 kb on - strand at 900.076 kb on + strand at 900.087 kb on + strand at 900.087 kb on + strand at 900.087 kb on + strand at 900.146 kb on + strand at 900.171 kb on + strand at 900.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 897,123 + AMB_RS04270 0.37 -0.2 897,123 + AMB_RS04270 0.37 -0.8 897,124 - AMB_RS04270 0.37 -1.5 897,295 - AMB_RS04270 0.49 -1.8 897,295 - AMB_RS04270 0.49 -1.1 897,298 - AMB_RS04270 0.50 -0.8 897,420 + AMB_RS04270 0.58 -1.8 897,463 - AMB_RS04270 0.61 -0.6 897,516 + AMB_RS04270 0.65 -1.3 897,517 - AMB_RS04270 0.65 +0.5 897,567 + AMB_RS04270 0.69 +0.5 898,031 + +0.7 898,032 - -1.3 898,963 + AMB_RS04275 0.68 -1.9 898,963 + AMB_RS04275 0.68 +0.3 899,047 + AMB_RS04275 0.74 -0.6 899,059 + AMB_RS04275 0.75 +0.5 899,060 - AMB_RS04275 0.75 -0.0 899,200 + AMB_RS04275 0.85 -1.5 899,201 - AMB_RS04275 0.85 +0.5 899,454 + -0.0 899,455 - +0.1 899,455 - -1.6 899,553 + AMB_RS04280 0.18 -5.9 899,553 + AMB_RS04280 0.18 +1.5 899,553 + AMB_RS04280 0.18 -0.8 899,553 + AMB_RS04280 0.18 +1.5 899,553 + AMB_RS04280 0.18 -2.9 899,553 + AMB_RS04280 0.18 -1.1 899,553 + AMB_RS04280 0.18 -4.3 899,553 + AMB_RS04280 0.18 -4.9 899,553 + AMB_RS04280 0.18 -1.5 899,553 + AMB_RS04280 0.18 -3.1 899,554 - AMB_RS04280 0.18 -3.7 899,554 - AMB_RS04280 0.18 -6.3 899,554 - AMB_RS04280 0.18 -4.8 899,554 - AMB_RS04280 0.18 -4.9 899,554 - AMB_RS04280 0.18 -1.1 899,554 - AMB_RS04280 0.18 -3.8 899,554 - AMB_RS04280 0.18 -6.0 899,554 - AMB_RS04280 0.18 -3.8 899,554 - AMB_RS04280 0.18 -6.0 899,554 - AMB_RS04280 0.18 -3.2 899,554 - AMB_RS04280 0.18 -4.9 899,554 - AMB_RS04280 0.18 -4.7 899,554 - AMB_RS04280 0.18 -3.7 899,554 - AMB_RS04280 0.18 -0.5 899,554 - AMB_RS04280 0.18 -2.6 899,554 - AMB_RS04280 0.18 -4.7 899,554 - AMB_RS04280 0.18 -3.5 899,659 + AMB_RS04280 0.37 -4.2 899,659 + AMB_RS04280 0.37 -5.1 899,659 + AMB_RS04280 0.37 -2.2 899,659 + AMB_RS04280 0.37 -5.5 899,659 + AMB_RS04280 0.37 -6.4 899,659 + AMB_RS04280 0.37 -6.1 899,659 + AMB_RS04280 0.37 -3.4 899,659 + AMB_RS04280 0.37 -4.9 899,659 + AMB_RS04280 0.37 -1.3 899,659 + AMB_RS04280 0.37 -3.5 899,659 + AMB_RS04280 0.37 -3.3 899,659 + AMB_RS04280 0.37 -4.7 899,659 + AMB_RS04280 0.37 -4.5 899,660 - AMB_RS04280 0.37 -3.5 899,660 - AMB_RS04280 0.37 +0.5 899,660 - AMB_RS04280 0.37 -0.5 899,660 - AMB_RS04280 0.37 -3.7 899,660 - AMB_RS04280 0.37 +0.5 899,660 - AMB_RS04280 0.37 -0.8 899,660 - AMB_RS04280 0.37 -1.3 899,661 + AMB_RS04280 0.37 -1.3 899,661 + AMB_RS04280 0.37 -0.8 899,661 + AMB_RS04280 0.37 -2.4 899,662 - AMB_RS04280 0.37 -0.3 899,662 - AMB_RS04280 0.37 -0.5 899,662 - AMB_RS04280 0.37 -3.0 899,662 - AMB_RS04280 0.37 -1.5 899,748 + AMB_RS04280 0.52 -2.2 899,848 + AMB_RS04280 0.70 -2.3 899,929 - AMB_RS04280 0.84 -2.7 899,968 - -1.8 900,073 + -2.3 900,073 + -0.8 900,074 - -0.1 900,074 - -0.0 900,076 + -1.9 900,087 + -4.3 900,087 + -4.5 900,087 + -2.9 900,146 + -1.9 900,171 + -0.4 900,171 + -0.3
Or see this region's nucleotide sequence