Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04225 and AMB_RS04230 are separated by 20 nucleotides AMB_RS04230 and AMB_RS04235 are separated by 109 nucleotides AMB_RS04235 and AMB_RS04240 are separated by 11 nucleotides
AMB_RS04225: AMB_RS04225 - EamA/RhaT family transporter, at 888,663 to 889,553
_RS04225
AMB_RS04230: AMB_RS04230 - acyl-CoA thioesterase, at 889,574 to 890,011
_RS04230
AMB_RS04235: AMB_RS04235 - hypothetical protein, at 890,121 to 890,567
_RS04235
AMB_RS04240: AMB_RS04240 - hypothetical protein, at 890,579 to 890,914
_RS04240
Position (kb) 889
890
891 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 888.681 kb on + strand at 888.681 kb on + strand at 888.681 kb on + strand at 889.164 kb on + strand, within AMB_RS04225 at 889.350 kb on + strand, within AMB_RS04225 at 889.350 kb on + strand, within AMB_RS04225 at 889.350 kb on + strand, within AMB_RS04225 at 889.351 kb on - strand, within AMB_RS04225 at 889.351 kb on - strand, within AMB_RS04225 at 889.351 kb on - strand, within AMB_RS04225 at 889.510 kb on + strand at 889.510 kb on + strand at 889.510 kb on + strand at 889.510 kb on + strand at 889.511 kb on - strand at 889.511 kb on - strand at 889.607 kb on + strand at 889.608 kb on - strand at 889.608 kb on - strand at 889.637 kb on + strand, within AMB_RS04230 at 889.638 kb on - strand, within AMB_RS04230 at 889.664 kb on - strand, within AMB_RS04230 at 889.835 kb on - strand, within AMB_RS04230 at 890.024 kb on + strand at 890.024 kb on + strand at 890.024 kb on + strand at 890.024 kb on + strand at 890.024 kb on + strand at 890.024 kb on + strand at 890.025 kb on - strand at 890.068 kb on + strand at 890.069 kb on - strand at 890.176 kb on + strand, within AMB_RS04235 at 890.177 kb on - strand, within AMB_RS04235 at 890.182 kb on + strand, within AMB_RS04235 at 890.182 kb on + strand, within AMB_RS04235 at 890.182 kb on + strand, within AMB_RS04235 at 890.183 kb on - strand, within AMB_RS04235 at 890.183 kb on - strand, within AMB_RS04235 at 890.183 kb on - strand, within AMB_RS04235 at 890.312 kb on - strand, within AMB_RS04235 at 890.396 kb on - strand, within AMB_RS04235 at 890.601 kb on + strand at 890.602 kb on - strand at 890.602 kb on - strand at 890.602 kb on - strand at 890.641 kb on - strand, within AMB_RS04240 at 890.641 kb on - strand, within AMB_RS04240 at 890.641 kb on - strand, within AMB_RS04240 at 890.641 kb on - strand, within AMB_RS04240 at 890.685 kb on + strand, within AMB_RS04240 at 890.686 kb on - strand, within AMB_RS04240 at 890.686 kb on - strand, within AMB_RS04240 at 890.686 kb on - strand, within AMB_RS04240 at 890.686 kb on - strand, within AMB_RS04240 at 890.847 kb on + strand, within AMB_RS04240 at 890.848 kb on - strand, within AMB_RS04240 at 890.848 kb on - strand, within AMB_RS04240 at 890.964 kb on + strand at 890.964 kb on + strand at 890.964 kb on + strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.965 kb on - strand at 890.966 kb on + strand at 890.966 kb on + strand at 890.966 kb on + strand at 890.967 kb on - strand at 890.967 kb on - strand at 890.967 kb on - strand at 890.967 kb on - strand at 890.967 kb on - strand at 891.006 kb on + strand at 891.006 kb on + strand at 891.006 kb on + strand at 891.007 kb on - strand at 891.007 kb on - strand at 891.007 kb on - strand at 891.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 888,681 + +1.1 888,681 + +0.5 888,681 + -0.1 889,164 + AMB_RS04225 0.56 -1.5 889,350 + AMB_RS04225 0.77 -0.9 889,350 + AMB_RS04225 0.77 -0.6 889,350 + AMB_RS04225 0.77 +0.1 889,351 - AMB_RS04225 0.77 -2.1 889,351 - AMB_RS04225 0.77 -0.7 889,351 - AMB_RS04225 0.77 -0.1 889,510 + -1.1 889,510 + +0.5 889,510 + +0.1 889,510 + +0.4 889,511 - +0.2 889,511 - -0.2 889,607 + -1.9 889,608 - -1.3 889,608 - +0.1 889,637 + AMB_RS04230 0.14 +0.1 889,638 - AMB_RS04230 0.15 -0.1 889,664 - AMB_RS04230 0.21 -1.0 889,835 - AMB_RS04230 0.60 -0.1 890,024 + -1.0 890,024 + -0.1 890,024 + -0.1 890,024 + +0.2 890,024 + -0.5 890,024 + -0.8 890,025 - +0.4 890,068 + -0.1 890,069 - -0.1 890,176 + AMB_RS04235 0.12 -0.8 890,177 - AMB_RS04235 0.13 +0.9 890,182 + AMB_RS04235 0.14 +0.5 890,182 + AMB_RS04235 0.14 -0.2 890,182 + AMB_RS04235 0.14 -1.1 890,183 - AMB_RS04235 0.14 -1.6 890,183 - AMB_RS04235 0.14 -1.5 890,183 - AMB_RS04235 0.14 +0.5 890,312 - AMB_RS04235 0.43 +1.5 890,396 - AMB_RS04235 0.62 +4.4 890,601 + -0.5 890,602 - -1.1 890,602 - -0.6 890,602 - +0.5 890,641 - AMB_RS04240 0.18 +1.1 890,641 - AMB_RS04240 0.18 +0.0 890,641 - AMB_RS04240 0.18 -0.7 890,641 - AMB_RS04240 0.18 -0.5 890,685 + AMB_RS04240 0.32 -0.3 890,686 - AMB_RS04240 0.32 -0.2 890,686 - AMB_RS04240 0.32 -1.3 890,686 - AMB_RS04240 0.32 -0.1 890,686 - AMB_RS04240 0.32 -1.8 890,847 + AMB_RS04240 0.80 -0.3 890,848 - AMB_RS04240 0.80 -0.7 890,848 - AMB_RS04240 0.80 -1.9 890,964 + +0.5 890,964 + -0.3 890,964 + -0.2 890,965 - -0.6 890,965 - +1.5 890,965 - -0.3 890,965 - -1.8 890,965 - -0.7 890,965 - -1.1 890,965 - +1.7 890,966 + -1.6 890,966 + -0.8 890,966 + +0.9 890,967 - -1.5 890,967 - +0.3 890,967 - +0.4 890,967 - +1.5 890,967 - -0.1 891,006 + -0.5 891,006 + -2.2 891,006 + -2.1 891,007 - -0.8 891,007 - +0.8 891,007 - +1.5 891,007 - +0.3
Or see this region's nucleotide sequence