Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04100

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS04095 and AMB_RS04100 are separated by 132 nucleotidesAMB_RS04100 and AMB_RS04105 are separated by 3 nucleotidesAMB_RS04105 and AMB_RS04110 are separated by 140 nucleotides AMB_RS04095: AMB_RS04095 - 4-hydroxy-2-oxoheptanedioate aldolase, at 859,171 to 859,974 _RS04095 AMB_RS04100: AMB_RS04100 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase, at 860,107 to 860,913 _RS04100 AMB_RS04105: AMB_RS04105 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 860,917 to 861,306 _RS04105 AMB_RS04110: AMB_RS04110 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase, at 861,447 to 862,310 _RS04110 Position (kb) 860 861Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 859.172 kb on + strandat 859.172 kb on + strandat 859.172 kb on + strandat 859.173 kb on - strandat 859.173 kb on - strandat 859.173 kb on - strandat 859.173 kb on - strandat 859.173 kb on - strandat 859.173 kb on - strandat 859.175 kb on + strandat 859.175 kb on + strandat 859.217 kb on + strandat 859.217 kb on + strandat 859.217 kb on + strandat 859.218 kb on - strandat 859.218 kb on - strandat 859.218 kb on - strandat 859.565 kb on + strand, within AMB_RS04095at 859.565 kb on + strand, within AMB_RS04095at 859.566 kb on - strand, within AMB_RS04095at 859.566 kb on - strand, within AMB_RS04095at 859.779 kb on - strand, within AMB_RS04095at 859.887 kb on + strand, within AMB_RS04095at 859.887 kb on + strand, within AMB_RS04095at 859.888 kb on - strand, within AMB_RS04095at 860.044 kb on - strandat 860.102 kb on + strandat 860.102 kb on + strandat 860.102 kb on + strandat 860.103 kb on - strandat 860.103 kb on - strandat 860.103 kb on - strandat 860.109 kb on - strandat 860.145 kb on - strandat 860.333 kb on + strand, within AMB_RS04100at 860.333 kb on + strand, within AMB_RS04100at 860.333 kb on + strand, within AMB_RS04100at 860.333 kb on + strand, within AMB_RS04100at 860.333 kb on + strand, within AMB_RS04100at 860.334 kb on - strand, within AMB_RS04100at 860.334 kb on - strand, within AMB_RS04100at 860.334 kb on - strand, within AMB_RS04100at 860.334 kb on - strand, within AMB_RS04100at 860.513 kb on + strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.514 kb on - strand, within AMB_RS04100at 860.793 kb on - strand, within AMB_RS04100at 860.981 kb on + strand, within AMB_RS04105at 860.982 kb on - strand, within AMB_RS04105at 860.982 kb on - strand, within AMB_RS04105at 861.017 kb on + strand, within AMB_RS04105at 861.018 kb on - strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.155 kb on + strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.156 kb on - strand, within AMB_RS04105at 861.284 kb on + strandat 861.285 kb on - strandat 861.285 kb on - strandat 861.502 kb on + strandat 861.502 kb on + strandat 861.532 kb on + strandat 861.532 kb on + strandat 861.532 kb on + strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.533 kb on - strandat 861.607 kb on + strand, within AMB_RS04110at 861.607 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.685 kb on + strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.686 kb on - strand, within AMB_RS04110at 861.892 kb on + strand, within AMB_RS04110at 861.893 kb on - strand, within AMB_RS04110

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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859,172 + -0.6
859,172 + -1.4
859,172 + -2.5
859,173 - -0.7
859,173 - -0.4
859,173 - -1.0
859,173 - -0.1
859,173 - +0.2
859,173 - -2.3
859,175 + -0.4
859,175 + +0.2
859,217 + -0.6
859,217 + +0.9
859,217 + -0.4
859,218 - -0.5
859,218 - -1.1
859,218 - -1.0
859,565 + AMB_RS04095 0.49 +0.6
859,565 + AMB_RS04095 0.49 +0.6
859,566 - AMB_RS04095 0.49 +0.9
859,566 - AMB_RS04095 0.49 -0.7
859,779 - AMB_RS04095 0.76 +0.3
859,887 + AMB_RS04095 0.89 -0.0
859,887 + AMB_RS04095 0.89 -0.4
859,888 - AMB_RS04095 0.89 +0.5
860,044 - -1.3
860,102 + -2.4
860,102 + -2.8
860,102 + -1.4
860,103 - -0.1
860,103 - -1.4
860,103 - -1.1
860,109 - -0.4
860,145 - -1.4
860,333 + AMB_RS04100 0.28 -1.4
860,333 + AMB_RS04100 0.28 -0.8
860,333 + AMB_RS04100 0.28 +0.7
860,333 + AMB_RS04100 0.28 -0.8
860,333 + AMB_RS04100 0.28 -1.0
860,334 - AMB_RS04100 0.28 +0.1
860,334 - AMB_RS04100 0.28 -0.0
860,334 - AMB_RS04100 0.28 -1.8
860,334 - AMB_RS04100 0.28 +0.6
860,513 + AMB_RS04100 0.50 -0.2
860,514 - AMB_RS04100 0.50 +1.6
860,514 - AMB_RS04100 0.50 +0.7
860,514 - AMB_RS04100 0.50 +0.2
860,514 - AMB_RS04100 0.50 -0.0
860,514 - AMB_RS04100 0.50 -1.4
860,514 - AMB_RS04100 0.50 -0.8
860,514 - AMB_RS04100 0.50 -0.8
860,793 - AMB_RS04100 0.85 +1.6
860,981 + AMB_RS04105 0.16 -1.0
860,982 - AMB_RS04105 0.17 -0.6
860,982 - AMB_RS04105 0.17 +0.2
861,017 + AMB_RS04105 0.26 +0.6
861,018 - AMB_RS04105 0.26 +0.1
861,155 + AMB_RS04105 0.61 -1.0
861,155 + AMB_RS04105 0.61 -2.7
861,155 + AMB_RS04105 0.61 -0.5
861,155 + AMB_RS04105 0.61 -0.4
861,155 + AMB_RS04105 0.61 -1.8
861,155 + AMB_RS04105 0.61 -1.0
861,155 + AMB_RS04105 0.61 -3.0
861,155 + AMB_RS04105 0.61 -0.5
861,155 + AMB_RS04105 0.61 -3.6
861,155 + AMB_RS04105 0.61 -0.0
861,156 - AMB_RS04105 0.61 -1.4
861,156 - AMB_RS04105 0.61 -0.8
861,156 - AMB_RS04105 0.61 -1.9
861,156 - AMB_RS04105 0.61 -1.4
861,156 - AMB_RS04105 0.61 -0.4
861,156 - AMB_RS04105 0.61 -0.8
861,284 + -0.3
861,285 - +1.6
861,285 - -0.4
861,502 + -0.4
861,502 + -0.1
861,532 + +0.2
861,532 + +1.4
861,532 + -0.1
861,533 - +0.6
861,533 - +0.2
861,533 - -2.0
861,533 - +0.6
861,533 - +0.6
861,607 + AMB_RS04110 0.19 -0.1
861,607 + AMB_RS04110 0.19 -2.0
861,685 + AMB_RS04110 0.28 +1.6
861,685 + AMB_RS04110 0.28 -1.4
861,685 + AMB_RS04110 0.28 -0.5
861,685 + AMB_RS04110 0.28 -2.0
861,686 - AMB_RS04110 0.28 -0.2
861,686 - AMB_RS04110 0.28 +0.1
861,686 - AMB_RS04110 0.28 -0.2
861,686 - AMB_RS04110 0.28 +0.9
861,892 + AMB_RS04110 0.52 -4.0
861,893 - AMB_RS04110 0.52 +0.2

Or see this region's nucleotide sequence