Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03550 and AMB_RS03555 overlap by 14 nucleotides AMB_RS03555 and AMB_RS03560 are separated by 127 nucleotides AMB_RS03560 and AMB_RS03565 are separated by 51 nucleotides
AMB_RS03550: AMB_RS03550 - hypothetical protein, at 744,974 to 746,083
_RS03550
AMB_RS03555: AMB_RS03555 - tetratricopeptide repeat protein, at 746,070 to 747,443
_RS03555
AMB_RS03560: AMB_RS03560 - tRNA-His, at 747,571 to 747,647
_RS03560
AMB_RS03565: AMB_RS03565 - pyridoxal phosphate-dependent aminotransferase, at 747,699 to 748,859
_RS03565
Position (kb) 746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 745.301 kb on + strand, within AMB_RS03550 at 745.302 kb on - strand, within AMB_RS03550 at 745.352 kb on + strand, within AMB_RS03550 at 745.353 kb on - strand, within AMB_RS03550 at 745.604 kb on + strand, within AMB_RS03550 at 745.829 kb on + strand, within AMB_RS03550 at 745.830 kb on - strand, within AMB_RS03550 at 745.830 kb on - strand, within AMB_RS03550 at 745.830 kb on - strand, within AMB_RS03550 at 746.056 kb on - strand at 746.283 kb on + strand, within AMB_RS03555 at 746.283 kb on + strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.284 kb on - strand, within AMB_RS03555 at 746.442 kb on + strand, within AMB_RS03555 at 746.841 kb on + strand, within AMB_RS03555 at 746.865 kb on + strand, within AMB_RS03555 at 746.865 kb on + strand, within AMB_RS03555 at 746.865 kb on + strand, within AMB_RS03555 at 746.865 kb on + strand, within AMB_RS03555 at 746.866 kb on - strand, within AMB_RS03555 at 746.866 kb on - strand, within AMB_RS03555 at 746.866 kb on - strand, within AMB_RS03555 at 746.908 kb on - strand, within AMB_RS03555 at 746.937 kb on + strand, within AMB_RS03555 at 746.937 kb on + strand, within AMB_RS03555 at 746.938 kb on - strand, within AMB_RS03555 at 747.093 kb on + strand, within AMB_RS03555 at 747.094 kb on - strand, within AMB_RS03555 at 747.094 kb on - strand, within AMB_RS03555 at 747.094 kb on - strand, within AMB_RS03555 at 747.180 kb on + strand, within AMB_RS03555 at 747.180 kb on + strand, within AMB_RS03555 at 747.180 kb on + strand, within AMB_RS03555 at 747.180 kb on + strand, within AMB_RS03555 at 747.181 kb on - strand, within AMB_RS03555 at 747.181 kb on - strand, within AMB_RS03555 at 747.181 kb on - strand, within AMB_RS03555 at 747.181 kb on - strand, within AMB_RS03555 at 747.279 kb on + strand, within AMB_RS03555 at 747.279 kb on + strand, within AMB_RS03555 at 747.279 kb on + strand, within AMB_RS03555 at 747.280 kb on - strand, within AMB_RS03555 at 747.303 kb on + strand, within AMB_RS03555 at 747.321 kb on + strand at 747.321 kb on + strand at 747.321 kb on + strand at 747.321 kb on + strand at 747.322 kb on - strand at 747.322 kb on - strand at 747.322 kb on - strand at 747.322 kb on - strand at 747.322 kb on - strand at 747.323 kb on + strand at 747.324 kb on - strand at 747.417 kb on + strand at 747.418 kb on - strand at 747.546 kb on - strand at 747.802 kb on + strand at 747.803 kb on - strand at 747.803 kb on - strand at 747.803 kb on - strand at 748.009 kb on + strand, within AMB_RS03565 at 748.009 kb on + strand, within AMB_RS03565 at 748.010 kb on - strand, within AMB_RS03565 at 748.010 kb on - strand, within AMB_RS03565 at 748.010 kb on - strand, within AMB_RS03565 at 748.012 kb on + strand, within AMB_RS03565 at 748.012 kb on + strand, within AMB_RS03565 at 748.012 kb on + strand, within AMB_RS03565 at 748.012 kb on + strand, within AMB_RS03565 at 748.013 kb on - strand, within AMB_RS03565 at 748.082 kb on - strand, within AMB_RS03565 at 748.082 kb on - strand, within AMB_RS03565 at 748.082 kb on - strand, within AMB_RS03565 at 748.082 kb on - strand, within AMB_RS03565 at 748.082 kb on - strand, within AMB_RS03565 at 748.243 kb on + strand, within AMB_RS03565 at 748.244 kb on - strand, within AMB_RS03565 at 748.258 kb on + strand, within AMB_RS03565 at 748.279 kb on + strand, within AMB_RS03565 at 748.279 kb on + strand, within AMB_RS03565 at 748.279 kb on + strand, within AMB_RS03565 at 748.279 kb on + strand, within AMB_RS03565 at 748.280 kb on - strand, within AMB_RS03565 at 748.280 kb on - strand, within AMB_RS03565 at 748.280 kb on - strand, within AMB_RS03565 at 748.280 kb on - strand, within AMB_RS03565 at 748.280 kb on - strand, within AMB_RS03565
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 745,301 + AMB_RS03550 0.29 -2.4 745,302 - AMB_RS03550 0.30 -0.4 745,352 + AMB_RS03550 0.34 -1.0 745,353 - AMB_RS03550 0.34 -1.8 745,604 + AMB_RS03550 0.57 +0.2 745,829 + AMB_RS03550 0.77 +0.1 745,830 - AMB_RS03550 0.77 +0.1 745,830 - AMB_RS03550 0.77 -3.0 745,830 - AMB_RS03550 0.77 -1.2 746,056 - +0.4 746,283 + AMB_RS03555 0.16 -0.7 746,283 + AMB_RS03555 0.16 -1.1 746,284 - AMB_RS03555 0.16 -0.4 746,284 - AMB_RS03555 0.16 -0.4 746,284 - AMB_RS03555 0.16 -0.2 746,284 - AMB_RS03555 0.16 +0.0 746,284 - AMB_RS03555 0.16 -0.7 746,284 - AMB_RS03555 0.16 -0.3 746,442 + AMB_RS03555 0.27 +0.1 746,841 + AMB_RS03555 0.56 -0.6 746,865 + AMB_RS03555 0.58 +0.7 746,865 + AMB_RS03555 0.58 +0.1 746,865 + AMB_RS03555 0.58 -0.2 746,865 + AMB_RS03555 0.58 -0.4 746,866 - AMB_RS03555 0.58 +0.6 746,866 - AMB_RS03555 0.58 -0.2 746,866 - AMB_RS03555 0.58 +0.4 746,908 - AMB_RS03555 0.61 -0.1 746,937 + AMB_RS03555 0.63 +0.2 746,937 + AMB_RS03555 0.63 -0.2 746,938 - AMB_RS03555 0.63 -2.1 747,093 + AMB_RS03555 0.74 -2.0 747,094 - AMB_RS03555 0.75 -2.1 747,094 - AMB_RS03555 0.75 -0.7 747,094 - AMB_RS03555 0.75 -1.2 747,180 + AMB_RS03555 0.81 -1.0 747,180 + AMB_RS03555 0.81 +0.8 747,180 + AMB_RS03555 0.81 -1.7 747,180 + AMB_RS03555 0.81 -1.2 747,181 - AMB_RS03555 0.81 -0.2 747,181 - AMB_RS03555 0.81 -1.6 747,181 - AMB_RS03555 0.81 +0.6 747,181 - AMB_RS03555 0.81 -1.2 747,279 + AMB_RS03555 0.88 +0.6 747,279 + AMB_RS03555 0.88 -1.0 747,279 + AMB_RS03555 0.88 +0.2 747,280 - AMB_RS03555 0.88 -1.8 747,303 + AMB_RS03555 0.90 +0.0 747,321 + -0.3 747,321 + -2.2 747,321 + +0.0 747,321 + +0.0 747,322 - -1.4 747,322 - +0.0 747,322 - +0.3 747,322 - +0.0 747,322 - -2.8 747,323 + +1.4 747,324 - -1.8 747,417 + -2.2 747,418 - -1.7 747,546 - -1.4 747,802 + +1.3 747,803 - +1.0 747,803 - +0.5 747,803 - -2.0 748,009 + AMB_RS03565 0.27 -0.0 748,009 + AMB_RS03565 0.27 -1.4 748,010 - AMB_RS03565 0.27 -0.2 748,010 - AMB_RS03565 0.27 -1.0 748,010 - AMB_RS03565 0.27 -0.4 748,012 + AMB_RS03565 0.27 -3.0 748,012 + AMB_RS03565 0.27 +0.5 748,012 + AMB_RS03565 0.27 +0.1 748,012 + AMB_RS03565 0.27 -0.2 748,013 - AMB_RS03565 0.27 -1.0 748,082 - AMB_RS03565 0.33 +1.6 748,082 - AMB_RS03565 0.33 +0.6 748,082 - AMB_RS03565 0.33 -0.7 748,082 - AMB_RS03565 0.33 +0.0 748,082 - AMB_RS03565 0.33 +0.1 748,243 + AMB_RS03565 0.47 -1.0 748,244 - AMB_RS03565 0.47 -1.2 748,258 + AMB_RS03565 0.48 -2.3 748,279 + AMB_RS03565 0.50 +0.4 748,279 + AMB_RS03565 0.50 -1.2 748,279 + AMB_RS03565 0.50 -0.7 748,279 + AMB_RS03565 0.50 +0.6 748,280 - AMB_RS03565 0.50 +0.6 748,280 - AMB_RS03565 0.50 -0.3 748,280 - AMB_RS03565 0.50 +0.3 748,280 - AMB_RS03565 0.50 +0.4 748,280 - AMB_RS03565 0.50 -0.3
Or see this region's nucleotide sequence