Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03425 and AMB_RS03435 are separated by 235 nucleotides AMB_RS03435 and AMB_RS03440 are separated by 284 nucleotides AMB_RS03440 and AMB_RS03445 are separated by 140 nucleotides
AMB_RS03425: AMB_RS03425 - hypothetical protein, at 716,928 to 717,689
_RS03425
AMB_RS03435: AMB_RS03435 - PAS domain-containing sensor histidine kinase, at 717,925 to 719,685
_RS03435
AMB_RS03440: AMB_RS03440 - hypothetical protein, at 719,970 to 720,536
_RS03440
AMB_RS03445: AMB_RS03445 - hypothetical protein, at 720,677 to 720,904
_RS03445
Position (kb) 717
718
719
720 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 716.951 kb on - strand at 716.951 kb on - strand at 716.957 kb on + strand at 716.958 kb on - strand at 717.126 kb on + strand, within AMB_RS03425 at 717.192 kb on - strand, within AMB_RS03425 at 717.210 kb on + strand, within AMB_RS03425 at 717.211 kb on - strand, within AMB_RS03425 at 717.211 kb on - strand, within AMB_RS03425 at 717.211 kb on - strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.213 kb on + strand, within AMB_RS03425 at 717.214 kb on - strand, within AMB_RS03425 at 717.214 kb on - strand, within AMB_RS03425 at 717.288 kb on + strand, within AMB_RS03425 at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.663 kb on + strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.664 kb on - strand at 717.694 kb on + strand at 717.694 kb on + strand at 717.695 kb on - strand at 717.695 kb on - strand at 717.695 kb on - strand at 717.781 kb on + strand at 718.229 kb on + strand, within AMB_RS03435 at 718.543 kb on + strand, within AMB_RS03435 at 718.544 kb on - strand, within AMB_RS03435 at 718.609 kb on + strand, within AMB_RS03435 at 718.609 kb on + strand, within AMB_RS03435 at 718.609 kb on + strand, within AMB_RS03435 at 718.610 kb on - strand, within AMB_RS03435 at 718.771 kb on + strand, within AMB_RS03435 at 718.898 kb on - strand, within AMB_RS03435 at 719.025 kb on + strand, within AMB_RS03435 at 719.026 kb on - strand, within AMB_RS03435 at 719.026 kb on - strand, within AMB_RS03435 at 719.058 kb on + strand, within AMB_RS03435 at 719.058 kb on + strand, within AMB_RS03435 at 719.058 kb on + strand, within AMB_RS03435 at 719.058 kb on + strand, within AMB_RS03435 at 719.058 kb on + strand, within AMB_RS03435 at 719.058 kb on + strand, within AMB_RS03435 at 719.058 kb on + strand, within AMB_RS03435 at 719.059 kb on - strand, within AMB_RS03435 at 719.059 kb on - strand, within AMB_RS03435 at 719.128 kb on + strand, within AMB_RS03435 at 719.129 kb on - strand, within AMB_RS03435 at 719.131 kb on - strand, within AMB_RS03435 at 719.583 kb on - strand at 719.583 kb on - strand at 719.671 kb on - strand at 719.699 kb on + strand at 719.763 kb on + strand at 719.763 kb on + strand at 719.763 kb on + strand at 719.764 kb on - strand at 719.764 kb on - strand at 719.764 kb on - strand at 720.514 kb on - strand at 720.514 kb on - strand at 720.544 kb on + strand at 720.597 kb on + strand at 720.597 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 716,951 - +0.7 716,951 - -1.0 716,957 + -0.1 716,958 - -1.5 717,126 + AMB_RS03425 0.26 -1.5 717,192 - AMB_RS03425 0.35 +1.6 717,210 + AMB_RS03425 0.37 +0.6 717,211 - AMB_RS03425 0.37 +0.2 717,211 - AMB_RS03425 0.37 +0.9 717,211 - AMB_RS03425 0.37 +0.4 717,213 + AMB_RS03425 0.37 -2.3 717,213 + AMB_RS03425 0.37 -0.5 717,213 + AMB_RS03425 0.37 +0.6 717,213 + AMB_RS03425 0.37 -0.3 717,213 + AMB_RS03425 0.37 -0.1 717,213 + AMB_RS03425 0.37 -2.2 717,214 - AMB_RS03425 0.38 +0.6 717,214 - AMB_RS03425 0.38 +0.4 717,288 + AMB_RS03425 0.47 -0.2 717,663 + +1.2 717,663 + +0.6 717,663 + +0.4 717,663 + -0.0 717,663 + -2.0 717,663 + +0.6 717,663 + -2.1 717,664 - -1.5 717,664 - -0.3 717,664 - -0.5 717,664 - -1.7 717,664 - +1.4 717,664 - -1.0 717,694 + -0.9 717,694 + -1.5 717,695 - -0.1 717,695 - -2.3 717,695 - -0.7 717,781 + -2.2 718,229 + AMB_RS03435 0.17 -0.4 718,543 + AMB_RS03435 0.35 +0.3 718,544 - AMB_RS03435 0.35 +0.1 718,609 + AMB_RS03435 0.39 +0.6 718,609 + AMB_RS03435 0.39 +0.6 718,609 + AMB_RS03435 0.39 +1.6 718,610 - AMB_RS03435 0.39 +1.6 718,771 + AMB_RS03435 0.48 -0.6 718,898 - AMB_RS03435 0.55 -0.1 719,025 + AMB_RS03435 0.62 -3.4 719,026 - AMB_RS03435 0.63 +0.6 719,026 - AMB_RS03435 0.63 -0.7 719,058 + AMB_RS03435 0.64 +0.6 719,058 + AMB_RS03435 0.64 +0.4 719,058 + AMB_RS03435 0.64 +0.0 719,058 + AMB_RS03435 0.64 -2.2 719,058 + AMB_RS03435 0.64 -0.7 719,058 + AMB_RS03435 0.64 -0.1 719,058 + AMB_RS03435 0.64 +0.0 719,059 - AMB_RS03435 0.64 -4.3 719,059 - AMB_RS03435 0.64 +2.6 719,128 + AMB_RS03435 0.68 -1.5 719,129 - AMB_RS03435 0.68 +0.5 719,131 - AMB_RS03435 0.68 +0.3 719,583 - -2.2 719,583 - -0.1 719,671 - -1.2 719,699 + -0.4 719,763 + -0.5 719,763 + +0.0 719,763 + -1.0 719,764 - -1.1 719,764 - +1.2 719,764 - +0.6 720,514 - -0.4 720,514 - +0.1 720,544 + -1.8 720,597 + +1.0 720,597 + -1.1 720,599 + -0.4 720,599 + -1.1 720,599 + -0.7 720,599 + -1.1 720,599 + -0.3 720,599 + -0.0
Or see this region's nucleotide sequence