Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03165

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03150 and AMB_RS03155 are separated by 2 nucleotidesAMB_RS03155 and AMB_RS03160 overlap by 4 nucleotidesAMB_RS03160 and AMB_RS03165 are separated by 198 nucleotidesAMB_RS03165 and AMB_RS03170 are separated by 39 nucleotidesAMB_RS03170 and AMB_RS03175 are separated by 29 nucleotidesAMB_RS03175 and AMB_RS03180 are separated by 15 nucleotides AMB_RS03150: AMB_RS03150 - hypothetical protein, at 658,405 to 658,737 _RS03150 AMB_RS03155: AMB_RS03155 - hypothetical protein, at 658,740 to 659,006 _RS03155 AMB_RS03160: AMB_RS03160 - flagellar protein FhlB, at 659,003 to 659,356 _RS03160 AMB_RS03165: AMB_RS03165 - flagellar basal body rod protein FlgB, at 659,555 to 659,956 _RS03165 AMB_RS03170: AMB_RS03170 - flagellar basal body rod protein FlgC, at 659,996 to 660,406 _RS03170 AMB_RS03175: AMB_RS03175 - flagellar hook-basal body protein FliE, at 660,436 to 660,747 _RS03175 AMB_RS03180: AMB_RS03180 - flagellar biosynthetic protein FliQ, at 660,763 to 661,032 _RS03180 Position (kb) 659 660Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 658.721 kb on + strandat 658.721 kb on + strandat 658.721 kb on + strandat 658.721 kb on + strandat 658.722 kb on - strandat 658.722 kb on - strandat 658.722 kb on - strandat 658.722 kb on - strandat 659.055 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.061 kb on + strand, within AMB_RS03160at 659.062 kb on - strand, within AMB_RS03160at 659.062 kb on - strand, within AMB_RS03160at 659.062 kb on - strand, within AMB_RS03160at 659.062 kb on - strand, within AMB_RS03160at 659.062 kb on - strand, within AMB_RS03160at 659.062 kb on - strand, within AMB_RS03160at 659.062 kb on - strand, within AMB_RS03160at 659.062 kb on - strand, within AMB_RS03160at 659.419 kb on + strandat 659.419 kb on + strandat 659.420 kb on - strandat 659.469 kb on - strandat 659.478 kb on + strandat 659.479 kb on - strandat 659.495 kb on + strandat 659.532 kb on + strandat 659.532 kb on + strandat 659.558 kb on + strandat 659.558 kb on + strandat 659.558 kb on + strandat 659.559 kb on - strandat 659.653 kb on + strand, within AMB_RS03165at 659.653 kb on + strand, within AMB_RS03165at 659.664 kb on - strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.758 kb on + strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.759 kb on - strand, within AMB_RS03165at 659.859 kb on + strand, within AMB_RS03165at 659.860 kb on - strand, within AMB_RS03165at 659.860 kb on - strand, within AMB_RS03165at 659.888 kb on + strand, within AMB_RS03165at 659.888 kb on + strand, within AMB_RS03165at 659.888 kb on + strand, within AMB_RS03165at 659.889 kb on - strand, within AMB_RS03165at 659.889 kb on - strand, within AMB_RS03165at 659.919 kb on - strandat 659.955 kb on - strandat 660.016 kb on + strandat 660.269 kb on + strand, within AMB_RS03170at 660.269 kb on + strand, within AMB_RS03170at 660.269 kb on + strand, within AMB_RS03170at 660.269 kb on + strand, within AMB_RS03170at 660.270 kb on - strand, within AMB_RS03170at 660.270 kb on - strand, within AMB_RS03170at 660.270 kb on - strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.335 kb on + strand, within AMB_RS03170at 660.336 kb on - strand, within AMB_RS03170at 660.336 kb on - strand, within AMB_RS03170at 660.469 kb on + strand, within AMB_RS03175at 660.470 kb on - strand, within AMB_RS03175at 660.470 kb on - strand, within AMB_RS03175at 660.471 kb on + strand, within AMB_RS03175at 660.471 kb on + strand, within AMB_RS03175at 660.472 kb on - strand, within AMB_RS03175at 660.472 kb on - strand, within AMB_RS03175at 660.718 kb on + strandat 660.718 kb on + strandat 660.719 kb on - strandat 660.719 kb on - strandat 660.719 kb on - strandat 660.720 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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658,721 + +0.1
658,721 + +0.1
658,721 + -0.3
658,721 + -2.9
658,722 - -1.2
658,722 - -1.2
658,722 - -0.9
658,722 - +0.6
659,055 + AMB_RS03160 0.15 +0.6
659,061 + AMB_RS03160 0.16 -0.9
659,061 + AMB_RS03160 0.16 +0.6
659,061 + AMB_RS03160 0.16 -0.4
659,061 + AMB_RS03160 0.16 -0.9
659,061 + AMB_RS03160 0.16 -1.8
659,061 + AMB_RS03160 0.16 +0.1
659,061 + AMB_RS03160 0.16 +0.3
659,061 + AMB_RS03160 0.16 -0.2
659,061 + AMB_RS03160 0.16 +0.6
659,061 + AMB_RS03160 0.16 -0.2
659,062 - AMB_RS03160 0.17 -1.2
659,062 - AMB_RS03160 0.17 -0.1
659,062 - AMB_RS03160 0.17 -0.5
659,062 - AMB_RS03160 0.17 +1.6
659,062 - AMB_RS03160 0.17 -0.9
659,062 - AMB_RS03160 0.17 +0.5
659,062 - AMB_RS03160 0.17 -1.4
659,062 - AMB_RS03160 0.17 +0.1
659,419 + -0.0
659,419 + +0.8
659,420 - -0.4
659,469 - +0.0
659,478 + -0.9
659,479 - -0.4
659,495 + -0.4
659,532 + -0.5
659,532 + -0.9
659,558 + -0.3
659,558 + -1.1
659,558 + -0.4
659,559 - -1.5
659,653 + AMB_RS03165 0.24 -2.8
659,653 + AMB_RS03165 0.24 -0.0
659,664 - AMB_RS03165 0.27 -0.3
659,758 + AMB_RS03165 0.50 -1.7
659,758 + AMB_RS03165 0.50 -3.0
659,758 + AMB_RS03165 0.50 -1.1
659,758 + AMB_RS03165 0.50 +0.1
659,758 + AMB_RS03165 0.50 +0.6
659,758 + AMB_RS03165 0.50 -0.7
659,758 + AMB_RS03165 0.50 -2.2
659,758 + AMB_RS03165 0.50 +0.1
659,758 + AMB_RS03165 0.50 +1.7
659,759 - AMB_RS03165 0.51 +0.5
659,759 - AMB_RS03165 0.51 -0.4
659,759 - AMB_RS03165 0.51 +0.4
659,759 - AMB_RS03165 0.51 +0.1
659,759 - AMB_RS03165 0.51 -0.4
659,759 - AMB_RS03165 0.51 +0.6
659,759 - AMB_RS03165 0.51 -0.4
659,759 - AMB_RS03165 0.51 +0.1
659,759 - AMB_RS03165 0.51 +0.3
659,759 - AMB_RS03165 0.51 -0.5
659,759 - AMB_RS03165 0.51 -0.0
659,859 + AMB_RS03165 0.76 -0.9
659,860 - AMB_RS03165 0.76 -0.7
659,860 - AMB_RS03165 0.76 +0.2
659,888 + AMB_RS03165 0.83 +0.1
659,888 + AMB_RS03165 0.83 +0.0
659,888 + AMB_RS03165 0.83 +2.5
659,889 - AMB_RS03165 0.83 +0.2
659,889 - AMB_RS03165 0.83 -0.4
659,919 - -0.7
659,955 - +0.4
660,016 + -2.3
660,269 + AMB_RS03170 0.66 -0.3
660,269 + AMB_RS03170 0.66 -0.5
660,269 + AMB_RS03170 0.66 +0.7
660,269 + AMB_RS03170 0.66 +0.2
660,270 - AMB_RS03170 0.67 +0.2
660,270 - AMB_RS03170 0.67 -0.9
660,270 - AMB_RS03170 0.67 +0.0
660,335 + AMB_RS03170 0.82 -0.1
660,335 + AMB_RS03170 0.82 -1.5
660,335 + AMB_RS03170 0.82 -1.3
660,335 + AMB_RS03170 0.82 -0.7
660,335 + AMB_RS03170 0.82 -2.3
660,335 + AMB_RS03170 0.82 -2.0
660,335 + AMB_RS03170 0.82 -0.0
660,336 - AMB_RS03170 0.83 -1.5
660,336 - AMB_RS03170 0.83 +0.1
660,469 + AMB_RS03175 0.11 +0.3
660,470 - AMB_RS03175 0.11 +0.6
660,470 - AMB_RS03175 0.11 +0.6
660,471 + AMB_RS03175 0.11 -2.7
660,471 + AMB_RS03175 0.11 -1.5
660,472 - AMB_RS03175 0.12 +0.8
660,472 - AMB_RS03175 0.12 -0.4
660,718 + -0.3
660,718 + -2.3
660,719 - -0.1
660,719 - -0.1
660,719 - +0.1
660,720 + -0.4

Or see this region's nucleotide sequence