Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02135

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS23870 and AMB_RS02130 are separated by 446 nucleotidesAMB_RS02130 and AMB_RS02135 are separated by 266 nucleotidesAMB_RS02135 and AMB_RS02140 are separated by 0 nucleotidesAMB_RS02140 and AMB_RS02145 overlap by 4 nucleotides AMB_RS23870: AMB_RS23870 - ParA family protein, at 448,228 to 448,884 _RS23870 AMB_RS02130: AMB_RS02130 - hypothetical protein, at 449,331 to 449,561 _RS02130 AMB_RS02135: AMB_RS02135 - acyltransferase, at 449,828 to 450,922 _RS02135 AMB_RS02140: AMB_RS02140 - PIG-L family deacetylase, at 450,923 to 451,735 _RS02140 AMB_RS02145: AMB_RS02145 - hypothetical protein, at 451,732 to 453,048 _RS02145 Position (kb) 449 450 451Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 448.851 kb on + strandat 448.854 kb on + strandat 448.855 kb on - strandat 448.862 kb on + strandat 448.862 kb on + strandat 448.862 kb on + strandat 448.863 kb on - strandat 448.867 kb on - strandat 449.057 kb on + strandat 449.057 kb on + strandat 449.057 kb on + strandat 449.058 kb on - strandat 449.058 kb on - strandat 449.058 kb on - strandat 449.155 kb on - strandat 449.176 kb on - strandat 449.540 kb on + strandat 449.553 kb on - strandat 449.567 kb on - strandat 449.570 kb on - strandat 449.934 kb on - strandat 449.937 kb on + strandat 449.937 kb on + strandat 449.937 kb on + strandat 449.938 kb on - strand, within AMB_RS02135at 449.938 kb on - strand, within AMB_RS02135at 449.951 kb on + strand, within AMB_RS02135at 449.951 kb on + strand, within AMB_RS02135at 449.951 kb on + strand, within AMB_RS02135at 449.951 kb on + strand, within AMB_RS02135at 449.952 kb on - strand, within AMB_RS02135at 449.952 kb on - strand, within AMB_RS02135at 449.952 kb on - strand, within AMB_RS02135at 449.979 kb on - strand, within AMB_RS02135at 449.979 kb on - strand, within AMB_RS02135at 450.036 kb on - strand, within AMB_RS02135at 450.123 kb on + strand, within AMB_RS02135at 450.139 kb on - strand, within AMB_RS02135at 450.139 kb on - strand, within AMB_RS02135at 450.139 kb on - strand, within AMB_RS02135at 450.139 kb on - strand, within AMB_RS02135at 450.152 kb on + strand, within AMB_RS02135at 450.152 kb on + strand, within AMB_RS02135at 450.153 kb on - strand, within AMB_RS02135at 450.155 kb on + strand, within AMB_RS02135at 450.155 kb on + strand, within AMB_RS02135at 450.156 kb on - strand, within AMB_RS02135at 450.156 kb on - strand, within AMB_RS02135at 450.156 kb on - strand, within AMB_RS02135at 450.156 kb on - strand, within AMB_RS02135at 450.169 kb on + strand, within AMB_RS02135at 450.199 kb on - strand, within AMB_RS02135at 450.199 kb on - strand, within AMB_RS02135at 450.206 kb on + strand, within AMB_RS02135at 450.206 kb on + strand, within AMB_RS02135at 450.207 kb on - strand, within AMB_RS02135at 450.207 kb on - strand, within AMB_RS02135at 450.207 kb on - strand, within AMB_RS02135at 450.270 kb on - strand, within AMB_RS02135at 450.323 kb on + strand, within AMB_RS02135at 450.324 kb on - strand, within AMB_RS02135at 450.389 kb on + strand, within AMB_RS02135at 450.389 kb on + strand, within AMB_RS02135at 450.390 kb on - strand, within AMB_RS02135at 450.390 kb on - strand, within AMB_RS02135at 450.390 kb on - strand, within AMB_RS02135at 450.443 kb on + strand, within AMB_RS02135at 450.569 kb on + strand, within AMB_RS02135at 450.569 kb on + strand, within AMB_RS02135at 450.569 kb on + strand, within AMB_RS02135at 450.570 kb on - strand, within AMB_RS02135at 450.621 kb on + strand, within AMB_RS02135at 450.671 kb on + strand, within AMB_RS02135at 450.671 kb on + strand, within AMB_RS02135at 450.671 kb on + strand, within AMB_RS02135at 450.671 kb on + strand, within AMB_RS02135at 450.672 kb on - strand, within AMB_RS02135at 450.672 kb on - strand, within AMB_RS02135at 450.672 kb on - strand, within AMB_RS02135at 450.672 kb on - strand, within AMB_RS02135at 450.682 kb on + strand, within AMB_RS02135at 450.731 kb on + strand, within AMB_RS02135at 450.731 kb on + strand, within AMB_RS02135at 450.731 kb on + strand, within AMB_RS02135at 450.731 kb on + strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.732 kb on - strand, within AMB_RS02135at 450.733 kb on + strand, within AMB_RS02135at 450.733 kb on + strand, within AMB_RS02135at 450.733 kb on + strand, within AMB_RS02135at 450.733 kb on + strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.734 kb on - strand, within AMB_RS02135at 450.805 kb on + strand, within AMB_RS02135at 450.806 kb on - strand, within AMB_RS02135at 450.806 kb on - strand, within AMB_RS02135at 450.852 kb on + strandat 450.921 kb on - strandat 450.921 kb on - strandat 450.921 kb on - strandat 451.077 kb on + strand, within AMB_RS02140at 451.077 kb on + strand, within AMB_RS02140at 451.077 kb on + strand, within AMB_RS02140at 451.078 kb on - strand, within AMB_RS02140at 451.078 kb on - strand, within AMB_RS02140at 451.078 kb on - strand, within AMB_RS02140at 451.110 kb on + strand, within AMB_RS02140at 451.110 kb on + strand, within AMB_RS02140at 451.110 kb on + strand, within AMB_RS02140at 451.111 kb on - strand, within AMB_RS02140at 451.117 kb on - strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.158 kb on + strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.159 kb on - strand, within AMB_RS02140at 451.185 kb on + strand, within AMB_RS02140at 451.186 kb on - strand, within AMB_RS02140at 451.186 kb on - strand, within AMB_RS02140at 451.299 kb on + strand, within AMB_RS02140at 451.299 kb on + strand, within AMB_RS02140at 451.300 kb on - strand, within AMB_RS02140at 451.300 kb on - strand, within AMB_RS02140at 451.386 kb on + strand, within AMB_RS02140at 451.386 kb on + strand, within AMB_RS02140at 451.386 kb on + strand, within AMB_RS02140at 451.829 kb on - strandat 451.829 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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448,851 + -2.1
448,854 + +1.7
448,855 - -1.3
448,862 + +0.8
448,862 + -1.3
448,862 + +0.3
448,863 - +1.7
448,867 - +0.3
449,057 + +0.3
449,057 + +0.1
449,057 + +0.2
449,058 - +0.7
449,058 - -0.4
449,058 - -1.6
449,155 - -0.1
449,176 - +0.4
449,540 + -2.8
449,553 - -1.1
449,567 - -0.0
449,570 - +0.1
449,934 - -0.5
449,937 + +0.5
449,937 + -1.3
449,937 + -0.5
449,938 - AMB_RS02135 0.10 -1.8
449,938 - AMB_RS02135 0.10 -2.1
449,951 + AMB_RS02135 0.11 -2.2
449,951 + AMB_RS02135 0.11 +0.1
449,951 + AMB_RS02135 0.11 -1.8
449,951 + AMB_RS02135 0.11 -0.3
449,952 - AMB_RS02135 0.11 -0.5
449,952 - AMB_RS02135 0.11 -0.9
449,952 - AMB_RS02135 0.11 +0.5
449,979 - AMB_RS02135 0.14 -0.6
449,979 - AMB_RS02135 0.14 -0.3
450,036 - AMB_RS02135 0.19 -0.2
450,123 + AMB_RS02135 0.27 -2.1
450,139 - AMB_RS02135 0.28 +0.1
450,139 - AMB_RS02135 0.28 +0.6
450,139 - AMB_RS02135 0.28 +0.2
450,139 - AMB_RS02135 0.28 -0.7
450,152 + AMB_RS02135 0.30 -2.4
450,152 + AMB_RS02135 0.30 -0.6
450,153 - AMB_RS02135 0.30 +0.1
450,155 + AMB_RS02135 0.30 -0.1
450,155 + AMB_RS02135 0.30 +0.3
450,156 - AMB_RS02135 0.30 -0.3
450,156 - AMB_RS02135 0.30 +0.5
450,156 - AMB_RS02135 0.30 +1.4
450,156 - AMB_RS02135 0.30 +0.7
450,169 + AMB_RS02135 0.31 -0.7
450,199 - AMB_RS02135 0.34 +0.5
450,199 - AMB_RS02135 0.34 -1.8
450,206 + AMB_RS02135 0.35 -0.6
450,206 + AMB_RS02135 0.35 +0.1
450,207 - AMB_RS02135 0.35 +1.7
450,207 - AMB_RS02135 0.35 -1.1
450,207 - AMB_RS02135 0.35 +0.1
450,270 - AMB_RS02135 0.40 -1.3
450,323 + AMB_RS02135 0.45 +0.1
450,324 - AMB_RS02135 0.45 -1.1
450,389 + AMB_RS02135 0.51 -0.9
450,389 + AMB_RS02135 0.51 +0.1
450,390 - AMB_RS02135 0.51 +0.1
450,390 - AMB_RS02135 0.51 -0.4
450,390 - AMB_RS02135 0.51 +0.2
450,443 + AMB_RS02135 0.56 -2.6
450,569 + AMB_RS02135 0.68 -0.3
450,569 + AMB_RS02135 0.68 -0.7
450,569 + AMB_RS02135 0.68 -1.1
450,570 - AMB_RS02135 0.68 +0.8
450,621 + AMB_RS02135 0.72 -0.3
450,671 + AMB_RS02135 0.77 -3.3
450,671 + AMB_RS02135 0.77 -0.6
450,671 + AMB_RS02135 0.77 +0.1
450,671 + AMB_RS02135 0.77 -1.1
450,672 - AMB_RS02135 0.77 -0.2
450,672 - AMB_RS02135 0.77 -0.1
450,672 - AMB_RS02135 0.77 -0.9
450,672 - AMB_RS02135 0.77 +0.5
450,682 + AMB_RS02135 0.78 -1.1
450,731 + AMB_RS02135 0.82 +1.9
450,731 + AMB_RS02135 0.82 -0.3
450,731 + AMB_RS02135 0.82 -1.1
450,731 + AMB_RS02135 0.82 -1.8
450,732 - AMB_RS02135 0.83 +0.5
450,732 - AMB_RS02135 0.83 -0.4
450,732 - AMB_RS02135 0.83 -1.9
450,732 - AMB_RS02135 0.83 -0.2
450,732 - AMB_RS02135 0.83 +0.1
450,732 - AMB_RS02135 0.83 +0.6
450,732 - AMB_RS02135 0.83 -0.3
450,732 - AMB_RS02135 0.83 -0.5
450,732 - AMB_RS02135 0.83 +0.2
450,732 - AMB_RS02135 0.83 -1.1
450,733 + AMB_RS02135 0.83 +1.0
450,733 + AMB_RS02135 0.83 -0.6
450,733 + AMB_RS02135 0.83 -2.4
450,733 + AMB_RS02135 0.83 -1.6
450,734 - AMB_RS02135 0.83 -0.3
450,734 - AMB_RS02135 0.83 -0.1
450,734 - AMB_RS02135 0.83 +0.1
450,734 - AMB_RS02135 0.83 -0.1
450,734 - AMB_RS02135 0.83 -0.6
450,734 - AMB_RS02135 0.83 -1.1
450,734 - AMB_RS02135 0.83 +0.7
450,734 - AMB_RS02135 0.83 -0.7
450,734 - AMB_RS02135 0.83 +0.7
450,805 + AMB_RS02135 0.89 -1.5
450,806 - AMB_RS02135 0.89 -0.9
450,806 - AMB_RS02135 0.89 +0.0
450,852 + -0.6
450,921 - -1.8
450,921 - +0.7
450,921 - +0.7
451,077 + AMB_RS02140 0.19 +1.7
451,077 + AMB_RS02140 0.19 +1.5
451,077 + AMB_RS02140 0.19 +0.1
451,078 - AMB_RS02140 0.19 -4.0
451,078 - AMB_RS02140 0.19 -0.6
451,078 - AMB_RS02140 0.19 -0.7
451,110 + AMB_RS02140 0.23 -1.1
451,110 + AMB_RS02140 0.23 -1.6
451,110 + AMB_RS02140 0.23 -3.8
451,111 - AMB_RS02140 0.23 -0.3
451,117 - AMB_RS02140 0.24 -0.2
451,158 + AMB_RS02140 0.29 +0.1
451,158 + AMB_RS02140 0.29 -1.1
451,158 + AMB_RS02140 0.29 -0.6
451,158 + AMB_RS02140 0.29 -0.3
451,158 + AMB_RS02140 0.29 -2.8
451,158 + AMB_RS02140 0.29 +0.2
451,158 + AMB_RS02140 0.29 +1.7
451,159 - AMB_RS02140 0.29 -0.4
451,159 - AMB_RS02140 0.29 +3.3
451,159 - AMB_RS02140 0.29 +0.7
451,159 - AMB_RS02140 0.29 -0.5
451,159 - AMB_RS02140 0.29 -0.7
451,159 - AMB_RS02140 0.29 -0.7
451,159 - AMB_RS02140 0.29 -1.1
451,159 - AMB_RS02140 0.29 -0.7
451,185 + AMB_RS02140 0.32 +0.1
451,186 - AMB_RS02140 0.32 -1.9
451,186 - AMB_RS02140 0.32 -0.3
451,299 + AMB_RS02140 0.46 -0.1
451,299 + AMB_RS02140 0.46 +0.4
451,300 - AMB_RS02140 0.46 -0.3
451,300 - AMB_RS02140 0.46 -0.3
451,386 + AMB_RS02140 0.57 -1.3
451,386 + AMB_RS02140 0.57 -0.1
451,386 + AMB_RS02140 0.57 -0.3
451,829 - +0.1
451,829 - -0.2

Or see this region's nucleotide sequence