Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01980

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01965 and AMB_RS01970 are separated by 10 nucleotidesAMB_RS01970 and AMB_RS01975 are separated by 4 nucleotidesAMB_RS01975 and AMB_RS01980 are separated by 2 nucleotidesAMB_RS01980 and AMB_RS01985 are separated by 2 nucleotidesAMB_RS01985 and AMB_RS01990 are separated by 29 nucleotidesAMB_RS01990 and AMB_RS01995 overlap by 8 nucleotides AMB_RS01965: AMB_RS01965 - hypothetical protein, at 416,203 to 417,072 _RS01965 AMB_RS01970: AMB_RS01970 - hypothetical protein, at 417,083 to 417,493 _RS01970 AMB_RS01975: AMB_RS01975 - hypothetical protein, at 417,498 to 418,064 _RS01975 AMB_RS01980: AMB_RS01980 - hypothetical protein, at 418,067 to 419,410 _RS01980 AMB_RS01985: AMB_RS01985 - hypothetical protein, at 419,413 to 419,850 _RS01985 AMB_RS01990: AMB_RS01990 - hypothetical protein, at 419,880 to 420,230 _RS01990 AMB_RS01995: AMB_RS01995 - DUF1833 domain-containing protein, at 420,223 to 420,747 _RS01995 Position (kb) 418 419 420Strain fitness (log2 ratio) -3 -2 -1 0 1at 417.101 kb on + strandat 417.243 kb on - strand, within AMB_RS01970at 417.243 kb on - strand, within AMB_RS01970at 417.288 kb on - strand, within AMB_RS01970at 417.301 kb on - strand, within AMB_RS01970at 417.301 kb on - strand, within AMB_RS01970at 417.301 kb on - strand, within AMB_RS01970at 417.301 kb on - strand, within AMB_RS01970at 417.480 kb on - strandat 417.480 kb on - strandat 417.480 kb on - strandat 417.480 kb on - strandat 417.480 kb on - strandat 417.480 kb on - strandat 417.792 kb on + strand, within AMB_RS01975at 417.792 kb on + strand, within AMB_RS01975at 417.792 kb on + strand, within AMB_RS01975at 417.876 kb on + strand, within AMB_RS01975at 417.876 kb on + strand, within AMB_RS01975at 417.902 kb on + strand, within AMB_RS01975at 417.903 kb on - strand, within AMB_RS01975at 417.939 kb on + strand, within AMB_RS01975at 417.939 kb on + strand, within AMB_RS01975at 417.939 kb on + strand, within AMB_RS01975at 417.939 kb on + strand, within AMB_RS01975at 417.940 kb on - strand, within AMB_RS01975at 417.940 kb on - strand, within AMB_RS01975at 417.940 kb on - strand, within AMB_RS01975at 417.999 kb on + strand, within AMB_RS01975at 417.999 kb on + strand, within AMB_RS01975at 417.999 kb on + strand, within AMB_RS01975at 417.999 kb on + strand, within AMB_RS01975at 417.999 kb on + strand, within AMB_RS01975at 418.000 kb on - strand, within AMB_RS01975at 418.000 kb on - strand, within AMB_RS01975at 418.000 kb on - strand, within AMB_RS01975at 418.000 kb on - strand, within AMB_RS01975at 418.012 kb on - strandat 418.023 kb on + strandat 418.023 kb on + strandat 418.023 kb on + strandat 418.025 kb on + strandat 418.052 kb on + strandat 418.053 kb on - strandat 418.100 kb on + strandat 418.111 kb on + strandat 418.111 kb on + strandat 418.200 kb on - strandat 418.200 kb on - strandat 418.209 kb on - strand, within AMB_RS01980at 418.209 kb on - strand, within AMB_RS01980at 418.235 kb on + strand, within AMB_RS01980at 418.235 kb on + strand, within AMB_RS01980at 418.235 kb on + strand, within AMB_RS01980at 418.235 kb on + strand, within AMB_RS01980at 418.235 kb on + strand, within AMB_RS01980at 418.236 kb on - strand, within AMB_RS01980at 418.236 kb on - strand, within AMB_RS01980at 418.236 kb on - strand, within AMB_RS01980at 418.250 kb on + strand, within AMB_RS01980at 418.250 kb on + strand, within AMB_RS01980at 418.252 kb on + strand, within AMB_RS01980at 418.252 kb on + strand, within AMB_RS01980at 418.252 kb on + strand, within AMB_RS01980at 418.252 kb on + strand, within AMB_RS01980at 418.252 kb on + strand, within AMB_RS01980at 418.301 kb on + strand, within AMB_RS01980at 418.301 kb on + strand, within AMB_RS01980at 418.301 kb on + strand, within AMB_RS01980at 418.302 kb on - strand, within AMB_RS01980at 418.302 kb on - strand, within AMB_RS01980at 418.307 kb on + strand, within AMB_RS01980at 418.349 kb on + strand, within AMB_RS01980at 418.349 kb on + strand, within AMB_RS01980at 418.349 kb on + strand, within AMB_RS01980at 418.350 kb on - strand, within AMB_RS01980at 418.350 kb on - strand, within AMB_RS01980at 418.387 kb on + strand, within AMB_RS01980at 418.440 kb on - strand, within AMB_RS01980at 418.440 kb on - strand, within AMB_RS01980at 418.611 kb on - strand, within AMB_RS01980at 418.635 kb on - strand, within AMB_RS01980at 418.658 kb on + strand, within AMB_RS01980at 418.658 kb on + strand, within AMB_RS01980at 418.731 kb on - strand, within AMB_RS01980at 418.731 kb on - strand, within AMB_RS01980at 418.922 kb on + strand, within AMB_RS01980at 418.923 kb on - strand, within AMB_RS01980at 418.923 kb on - strand, within AMB_RS01980at 418.923 kb on - strand, within AMB_RS01980at 418.923 kb on - strand, within AMB_RS01980at 418.965 kb on - strand, within AMB_RS01980at 419.007 kb on - strand, within AMB_RS01980at 419.007 kb on - strand, within AMB_RS01980at 419.066 kb on + strand, within AMB_RS01980at 419.066 kb on + strand, within AMB_RS01980at 419.078 kb on + strand, within AMB_RS01980at 419.087 kb on + strand, within AMB_RS01980at 419.087 kb on + strand, within AMB_RS01980at 419.090 kb on + strand, within AMB_RS01980at 419.090 kb on + strand, within AMB_RS01980at 419.090 kb on + strand, within AMB_RS01980at 419.090 kb on + strand, within AMB_RS01980at 419.090 kb on + strand, within AMB_RS01980at 419.093 kb on + strand, within AMB_RS01980at 419.093 kb on + strand, within AMB_RS01980at 419.093 kb on + strand, within AMB_RS01980at 419.093 kb on + strand, within AMB_RS01980at 419.093 kb on + strand, within AMB_RS01980at 419.144 kb on + strand, within AMB_RS01980at 419.144 kb on + strand, within AMB_RS01980at 419.145 kb on - strand, within AMB_RS01980at 419.145 kb on - strand, within AMB_RS01980at 419.145 kb on - strand, within AMB_RS01980at 419.145 kb on - strand, within AMB_RS01980at 419.145 kb on - strand, within AMB_RS01980at 419.145 kb on - strand, within AMB_RS01980at 419.174 kb on + strand, within AMB_RS01980at 419.174 kb on + strand, within AMB_RS01980at 419.174 kb on + strand, within AMB_RS01980at 419.222 kb on + strand, within AMB_RS01980at 419.222 kb on + strand, within AMB_RS01980at 419.223 kb on - strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.255 kb on + strand, within AMB_RS01980at 419.256 kb on - strand, within AMB_RS01980at 419.256 kb on - strand, within AMB_RS01980at 419.256 kb on - strand, within AMB_RS01980at 419.256 kb on - strand, within AMB_RS01980at 419.256 kb on - strand, within AMB_RS01980at 419.256 kb on - strand, within AMB_RS01980at 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.343 kb on - strandat 419.546 kb on - strand, within AMB_RS01985at 419.752 kb on + strand, within AMB_RS01985at 419.753 kb on - strand, within AMB_RS01985at 419.753 kb on - strand, within AMB_RS01985at 419.753 kb on - strand, within AMB_RS01985at 419.753 kb on - strand, within AMB_RS01985at 419.831 kb on + strandat 419.832 kb on - strandat 419.832 kb on - strandat 419.925 kb on + strand, within AMB_RS01990at 419.925 kb on + strand, within AMB_RS01990at 419.925 kb on + strand, within AMB_RS01990at 419.925 kb on + strand, within AMB_RS01990at 419.925 kb on + strand, within AMB_RS01990at 419.925 kb on + strand, within AMB_RS01990at 419.925 kb on + strand, within AMB_RS01990at 419.992 kb on + strand, within AMB_RS01990at 419.992 kb on + strand, within AMB_RS01990at 419.992 kb on + strand, within AMB_RS01990at 419.992 kb on + strand, within AMB_RS01990at 419.992 kb on + strand, within AMB_RS01990at 419.993 kb on - strand, within AMB_RS01990at 419.993 kb on - strand, within AMB_RS01990at 419.993 kb on - strand, within AMB_RS01990at 419.993 kb on - strand, within AMB_RS01990at 419.993 kb on - strand, within AMB_RS01990at 419.993 kb on - strand, within AMB_RS01990at 419.993 kb on - strand, within AMB_RS01990at 419.993 kb on - strand, within AMB_RS01990

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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417,101 + +0.7
417,243 - AMB_RS01970 0.39 +0.7
417,243 - AMB_RS01970 0.39 +0.1
417,288 - AMB_RS01970 0.50 -0.3
417,301 - AMB_RS01970 0.53 -1.1
417,301 - AMB_RS01970 0.53 -0.3
417,301 - AMB_RS01970 0.53 +1.0
417,301 - AMB_RS01970 0.53 +0.1
417,480 - +0.1
417,480 - -3.2
417,480 - +0.1
417,480 - +0.7
417,480 - +0.7
417,480 - -0.2
417,792 + AMB_RS01975 0.52 -0.3
417,792 + AMB_RS01975 0.52 -0.9
417,792 + AMB_RS01975 0.52 -0.7
417,876 + AMB_RS01975 0.67 +0.2
417,876 + AMB_RS01975 0.67 -0.3
417,902 + AMB_RS01975 0.71 -0.7
417,903 - AMB_RS01975 0.71 +1.1
417,939 + AMB_RS01975 0.78 -0.6
417,939 + AMB_RS01975 0.78 -0.2
417,939 + AMB_RS01975 0.78 -0.7
417,939 + AMB_RS01975 0.78 -0.6
417,940 - AMB_RS01975 0.78 -0.6
417,940 - AMB_RS01975 0.78 -0.6
417,940 - AMB_RS01975 0.78 -0.0
417,999 + AMB_RS01975 0.88 +0.1
417,999 + AMB_RS01975 0.88 -1.0
417,999 + AMB_RS01975 0.88 -0.1
417,999 + AMB_RS01975 0.88 +0.1
417,999 + AMB_RS01975 0.88 +0.1
418,000 - AMB_RS01975 0.89 -0.1
418,000 - AMB_RS01975 0.89 -0.6
418,000 - AMB_RS01975 0.89 +0.4
418,000 - AMB_RS01975 0.89 -0.1
418,012 - -0.3
418,023 + +0.2
418,023 + +0.0
418,023 + -2.5
418,025 + +0.6
418,052 + -0.8
418,053 - +0.0
418,100 + -0.3
418,111 + +0.1
418,111 + -0.0
418,200 - -0.3
418,200 - +0.2
418,209 - AMB_RS01980 0.11 -0.0
418,209 - AMB_RS01980 0.11 +0.9
418,235 + AMB_RS01980 0.12 +0.4
418,235 + AMB_RS01980 0.12 -1.1
418,235 + AMB_RS01980 0.12 +0.0
418,235 + AMB_RS01980 0.12 -0.3
418,235 + AMB_RS01980 0.12 +0.6
418,236 - AMB_RS01980 0.13 -0.7
418,236 - AMB_RS01980 0.13 -1.5
418,236 - AMB_RS01980 0.13 -0.6
418,250 + AMB_RS01980 0.14 -0.1
418,250 + AMB_RS01980 0.14 -0.9
418,252 + AMB_RS01980 0.14 -2.8
418,252 + AMB_RS01980 0.14 -2.5
418,252 + AMB_RS01980 0.14 +0.7
418,252 + AMB_RS01980 0.14 -0.3
418,252 + AMB_RS01980 0.14 -0.3
418,301 + AMB_RS01980 0.17 +1.7
418,301 + AMB_RS01980 0.17 +0.6
418,301 + AMB_RS01980 0.17 +0.7
418,302 - AMB_RS01980 0.17 -0.9
418,302 - AMB_RS01980 0.17 -1.3
418,307 + AMB_RS01980 0.18 -1.0
418,349 + AMB_RS01980 0.21 -1.2
418,349 + AMB_RS01980 0.21 +0.3
418,349 + AMB_RS01980 0.21 +0.6
418,350 - AMB_RS01980 0.21 +0.1
418,350 - AMB_RS01980 0.21 -1.9
418,387 + AMB_RS01980 0.24 -0.1
418,440 - AMB_RS01980 0.28 -2.1
418,440 - AMB_RS01980 0.28 -0.3
418,611 - AMB_RS01980 0.40 -2.9
418,635 - AMB_RS01980 0.42 -1.3
418,658 + AMB_RS01980 0.44 -2.3
418,658 + AMB_RS01980 0.44 -1.3
418,731 - AMB_RS01980 0.49 -0.3
418,731 - AMB_RS01980 0.49 -0.6
418,922 + AMB_RS01980 0.64 +0.0
418,923 - AMB_RS01980 0.64 +0.5
418,923 - AMB_RS01980 0.64 -0.7
418,923 - AMB_RS01980 0.64 -1.8
418,923 - AMB_RS01980 0.64 +0.2
418,965 - AMB_RS01980 0.67 +0.0
419,007 - AMB_RS01980 0.70 +0.1
419,007 - AMB_RS01980 0.70 -0.3
419,066 + AMB_RS01980 0.74 -1.5
419,066 + AMB_RS01980 0.74 +0.5
419,078 + AMB_RS01980 0.75 -0.3
419,087 + AMB_RS01980 0.76 -2.2
419,087 + AMB_RS01980 0.76 -1.3
419,090 + AMB_RS01980 0.76 +1.7
419,090 + AMB_RS01980 0.76 +0.1
419,090 + AMB_RS01980 0.76 -2.0
419,090 + AMB_RS01980 0.76 +0.7
419,090 + AMB_RS01980 0.76 -0.3
419,093 + AMB_RS01980 0.76 -1.3
419,093 + AMB_RS01980 0.76 -2.8
419,093 + AMB_RS01980 0.76 +0.2
419,093 + AMB_RS01980 0.76 -0.5
419,093 + AMB_RS01980 0.76 +0.8
419,144 + AMB_RS01980 0.80 +0.7
419,144 + AMB_RS01980 0.80 -2.7
419,145 - AMB_RS01980 0.80 +0.1
419,145 - AMB_RS01980 0.80 +0.7
419,145 - AMB_RS01980 0.80 -1.1
419,145 - AMB_RS01980 0.80 -0.5
419,145 - AMB_RS01980 0.80 -0.0
419,145 - AMB_RS01980 0.80 -0.6
419,174 + AMB_RS01980 0.82 -0.2
419,174 + AMB_RS01980 0.82 +0.3
419,174 + AMB_RS01980 0.82 -0.1
419,222 + AMB_RS01980 0.86 +1.0
419,222 + AMB_RS01980 0.86 -2.3
419,223 - AMB_RS01980 0.86 -0.6
419,255 + AMB_RS01980 0.88 -1.8
419,255 + AMB_RS01980 0.88 -0.6
419,255 + AMB_RS01980 0.88 -0.2
419,255 + AMB_RS01980 0.88 -0.2
419,255 + AMB_RS01980 0.88 +0.2
419,255 + AMB_RS01980 0.88 -0.1
419,255 + AMB_RS01980 0.88 -1.1
419,255 + AMB_RS01980 0.88 -0.4
419,255 + AMB_RS01980 0.88 -0.3
419,256 - AMB_RS01980 0.88 +0.2
419,256 - AMB_RS01980 0.88 -1.8
419,256 - AMB_RS01980 0.88 +0.1
419,256 - AMB_RS01980 0.88 -1.5
419,256 - AMB_RS01980 0.88 -0.0
419,256 - AMB_RS01980 0.88 -0.4
419,343 - -0.9
419,343 - +0.1
419,343 - +0.1
419,343 - +0.3
419,546 - AMB_RS01985 0.30 +0.7
419,752 + AMB_RS01985 0.77 +0.4
419,753 - AMB_RS01985 0.78 +0.7
419,753 - AMB_RS01985 0.78 -0.6
419,753 - AMB_RS01985 0.78 -2.0
419,753 - AMB_RS01985 0.78 +0.3
419,831 + -2.2
419,832 - -0.9
419,832 - +0.1
419,925 + AMB_RS01990 0.13 -1.8
419,925 + AMB_RS01990 0.13 -0.3
419,925 + AMB_RS01990 0.13 +1.7
419,925 + AMB_RS01990 0.13 -0.9
419,925 + AMB_RS01990 0.13 -3.5
419,925 + AMB_RS01990 0.13 +0.1
419,925 + AMB_RS01990 0.13 +1.4
419,992 + AMB_RS01990 0.32 -1.3
419,992 + AMB_RS01990 0.32 +0.7
419,992 + AMB_RS01990 0.32 +0.1
419,992 + AMB_RS01990 0.32 +0.7
419,992 + AMB_RS01990 0.32 +0.1
419,993 - AMB_RS01990 0.32 +0.6
419,993 - AMB_RS01990 0.32 +0.1
419,993 - AMB_RS01990 0.32 +0.7
419,993 - AMB_RS01990 0.32 -1.3
419,993 - AMB_RS01990 0.32 +0.5
419,993 - AMB_RS01990 0.32 -1.6
419,993 - AMB_RS01990 0.32 -1.3
419,993 - AMB_RS01990 0.32 -0.6

Or see this region's nucleotide sequence