Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01650 and AMB_RS01655 are separated by 170 nucleotides AMB_RS01655 and AMB_RS01660 are separated by 62 nucleotides AMB_RS01660 and AMB_RS01665 overlap by 4 nucleotides AMB_RS01665 and AMB_RS01670 are separated by 4 nucleotides
AMB_RS01650: AMB_RS01650 - ATPase, at 363,896 to 366,556
_RS01650
AMB_RS01655: AMB_RS01655 - hypothetical protein, at 366,727 to 367,344
_RS01655
AMB_RS01660: AMB_RS01660 - class I SAM-dependent RNA methyltransferase, at 367,407 to 368,723
_RS01660
AMB_RS01665: AMB_RS01665 - ABC transporter, at 368,720 to 369,313
_RS01665
AMB_RS01670: AMB_RS01670 - MCE family protein, at 369,318 to 370,280
_RS01670
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.570 kb on - strand at 366.570 kb on - strand at 366.601 kb on + strand at 366.602 kb on - strand at 366.602 kb on - strand at 366.608 kb on - strand at 366.608 kb on - strand at 366.646 kb on + strand at 366.650 kb on - strand at 366.669 kb on + strand at 366.670 kb on - strand at 366.670 kb on - strand at 366.770 kb on - strand at 366.784 kb on - strand at 367.062 kb on + strand, within AMB_RS01655 at 367.092 kb on - strand, within AMB_RS01655 at 367.126 kb on - strand, within AMB_RS01655 at 367.126 kb on - strand, within AMB_RS01655 at 367.244 kb on - strand, within AMB_RS01655 at 367.349 kb on - strand at 367.371 kb on - strand at 367.371 kb on - strand at 367.701 kb on - strand, within AMB_RS01660 at 367.701 kb on - strand, within AMB_RS01660 at 367.822 kb on + strand, within AMB_RS01660 at 367.823 kb on - strand, within AMB_RS01660 at 367.823 kb on - strand, within AMB_RS01660 at 367.847 kb on + strand, within AMB_RS01660 at 367.847 kb on + strand, within AMB_RS01660 at 367.848 kb on - strand, within AMB_RS01660 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.838 kb on + strand, within AMB_RS01665 at 368.839 kb on - strand, within AMB_RS01665 at 368.839 kb on - strand, within AMB_RS01665 at 368.839 kb on - strand, within AMB_RS01665 at 368.839 kb on - strand, within AMB_RS01665 at 369.021 kb on + strand, within AMB_RS01665 at 369.021 kb on + strand, within AMB_RS01665 at 369.022 kb on - strand, within AMB_RS01665 at 369.075 kb on + strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.076 kb on - strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.081 kb on + strand, within AMB_RS01665 at 369.082 kb on - strand, within AMB_RS01665 at 369.082 kb on - strand, within AMB_RS01665 at 369.082 kb on - strand, within AMB_RS01665 at 369.082 kb on - strand, within AMB_RS01665 at 369.218 kb on + strand, within AMB_RS01665 at 369.228 kb on + strand, within AMB_RS01665 at 369.229 kb on - strand, within AMB_RS01665 at 369.296 kb on + strand at 369.319 kb on + strand at 369.320 kb on - strand at 369.431 kb on + strand, within AMB_RS01670 at 369.431 kb on + strand, within AMB_RS01670 at 369.431 kb on + strand, within AMB_RS01670 at 369.432 kb on - strand, within AMB_RS01670 at 369.432 kb on - strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.433 kb on + strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670 at 369.434 kb on - strand, within AMB_RS01670
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 366,570 - -1.1 366,570 - -1.6 366,601 + -0.3 366,602 - -1.8 366,602 - +0.2 366,608 - +0.1 366,608 - +0.1 366,646 + -1.1 366,650 - +1.0 366,669 + -0.4 366,670 - -0.3 366,670 - -0.0 366,770 - +1.9 366,784 - -1.5 367,062 + AMB_RS01655 0.54 -1.3 367,092 - AMB_RS01655 0.59 -0.3 367,126 - AMB_RS01655 0.65 -0.9 367,126 - AMB_RS01655 0.65 +0.7 367,244 - AMB_RS01655 0.84 -0.3 367,349 - -0.2 367,371 - +1.7 367,371 - -1.6 367,701 - AMB_RS01660 0.22 -0.1 367,701 - AMB_RS01660 0.22 +0.1 367,822 + AMB_RS01660 0.32 -0.1 367,823 - AMB_RS01660 0.32 +0.1 367,823 - AMB_RS01660 0.32 -2.9 367,847 + AMB_RS01660 0.33 -3.3 367,847 + AMB_RS01660 0.33 -0.9 367,848 - AMB_RS01660 0.33 -0.2 368,838 + AMB_RS01665 0.20 -0.6 368,838 + AMB_RS01665 0.20 -0.9 368,838 + AMB_RS01665 0.20 -0.7 368,838 + AMB_RS01665 0.20 -0.3 368,838 + AMB_RS01665 0.20 -0.3 368,838 + AMB_RS01665 0.20 -0.3 368,838 + AMB_RS01665 0.20 -0.4 368,839 - AMB_RS01665 0.20 -0.2 368,839 - AMB_RS01665 0.20 -2.5 368,839 - AMB_RS01665 0.20 +0.4 368,839 - AMB_RS01665 0.20 -1.8 369,021 + AMB_RS01665 0.51 +0.7 369,021 + AMB_RS01665 0.51 +0.6 369,022 - AMB_RS01665 0.51 +1.2 369,075 + AMB_RS01665 0.60 +0.7 369,076 - AMB_RS01665 0.60 -0.1 369,076 - AMB_RS01665 0.60 -2.3 369,076 - AMB_RS01665 0.60 -0.0 369,076 - AMB_RS01665 0.60 +0.0 369,076 - AMB_RS01665 0.60 +0.4 369,081 + AMB_RS01665 0.61 -0.3 369,081 + AMB_RS01665 0.61 +0.6 369,081 + AMB_RS01665 0.61 -0.8 369,081 + AMB_RS01665 0.61 +0.2 369,081 + AMB_RS01665 0.61 -0.6 369,082 - AMB_RS01665 0.61 -0.8 369,082 - AMB_RS01665 0.61 -0.9 369,082 - AMB_RS01665 0.61 -2.2 369,082 - AMB_RS01665 0.61 -0.6 369,218 + AMB_RS01665 0.84 -0.2 369,228 + AMB_RS01665 0.86 +0.0 369,229 - AMB_RS01665 0.86 -1.1 369,296 + -0.4 369,319 + +0.2 369,320 - +0.1 369,431 + AMB_RS01670 0.12 -0.5 369,431 + AMB_RS01670 0.12 +0.2 369,431 + AMB_RS01670 0.12 -1.3 369,432 - AMB_RS01670 0.12 -0.5 369,432 - AMB_RS01670 0.12 -0.1 369,433 + AMB_RS01670 0.12 -0.3 369,433 + AMB_RS01670 0.12 +0.3 369,433 + AMB_RS01670 0.12 +0.7 369,433 + AMB_RS01670 0.12 -1.3 369,433 + AMB_RS01670 0.12 +0.7 369,433 + AMB_RS01670 0.12 -0.5 369,433 + AMB_RS01670 0.12 -0.8 369,433 + AMB_RS01670 0.12 +0.2 369,433 + AMB_RS01670 0.12 -0.6 369,433 + AMB_RS01670 0.12 -0.1 369,434 - AMB_RS01670 0.12 -0.2 369,434 - AMB_RS01670 0.12 -0.6 369,434 - AMB_RS01670 0.12 +0.4 369,434 - AMB_RS01670 0.12 +0.1 369,434 - AMB_RS01670 0.12 -0.2 369,434 - AMB_RS01670 0.12 -0.0
Or see this region's nucleotide sequence