Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01530 and AMB_RS01535 are separated by 21 nucleotides AMB_RS01535 and AMB_RS01540 overlap by 4 nucleotides
AMB_RS01530: AMB_RS01530 - divergent polysaccharide deacetylase family protein, at 338,504 to 339,943
_RS01530
AMB_RS01535: AMB_RS01535 - S41 family peptidase, at 339,965 to 341,314
_RS01535
AMB_RS01540: AMB_RS01540 - peptidase M23, at 341,311 to 342,828
_RS01540
Position (kb) 339
340
341
342 Strain fitness (log2 ratio) -2
-1
0
1 at 339.040 kb on + strand, within AMB_RS01530 at 339.040 kb on + strand, within AMB_RS01530 at 339.040 kb on + strand, within AMB_RS01530 at 339.057 kb on + strand, within AMB_RS01530 at 339.057 kb on + strand, within AMB_RS01530 at 339.193 kb on - strand, within AMB_RS01530 at 339.193 kb on - strand, within AMB_RS01530 at 339.193 kb on - strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.324 kb on + strand, within AMB_RS01530 at 339.325 kb on - strand, within AMB_RS01530 at 339.444 kb on + strand, within AMB_RS01530 at 339.444 kb on + strand, within AMB_RS01530 at 339.445 kb on - strand, within AMB_RS01530 at 339.780 kb on + strand, within AMB_RS01530 at 339.780 kb on + strand, within AMB_RS01530 at 339.780 kb on + strand, within AMB_RS01530 at 339.780 kb on + strand, within AMB_RS01530 at 339.781 kb on - strand, within AMB_RS01530 at 339.781 kb on - strand, within AMB_RS01530 at 341.391 kb on - strand at 341.391 kb on - strand at 341.497 kb on - strand, within AMB_RS01540 at 341.497 kb on - strand, within AMB_RS01540 at 341.657 kb on + strand, within AMB_RS01540 at 341.658 kb on - strand, within AMB_RS01540
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 339,040 + AMB_RS01530 0.37 -0.3 339,040 + AMB_RS01530 0.37 -1.7 339,040 + AMB_RS01530 0.37 +0.3 339,057 + AMB_RS01530 0.38 +0.3 339,057 + AMB_RS01530 0.38 +0.7 339,193 - AMB_RS01530 0.48 -0.9 339,193 - AMB_RS01530 0.48 +0.3 339,193 - AMB_RS01530 0.48 -0.9 339,324 + AMB_RS01530 0.57 +0.2 339,324 + AMB_RS01530 0.57 -0.2 339,324 + AMB_RS01530 0.57 +0.2 339,324 + AMB_RS01530 0.57 -1.5 339,324 + AMB_RS01530 0.57 -0.1 339,325 - AMB_RS01530 0.57 +0.2 339,444 + AMB_RS01530 0.65 +0.1 339,444 + AMB_RS01530 0.65 -0.9 339,445 - AMB_RS01530 0.65 -1.1 339,780 + AMB_RS01530 0.89 -0.6 339,780 + AMB_RS01530 0.89 +1.7 339,780 + AMB_RS01530 0.89 -2.2 339,780 + AMB_RS01530 0.89 +1.7 339,781 - AMB_RS01530 0.89 -0.4 339,781 - AMB_RS01530 0.89 +0.7 341,391 - -1.1 341,391 - +0.1 341,497 - AMB_RS01540 0.12 -2.1 341,497 - AMB_RS01540 0.12 +0.1 341,657 + AMB_RS01540 0.23 -2.5 341,658 - AMB_RS01540 0.23 -0.9
Or see this region's nucleotide sequence