Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01455

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01445 and AMB_RS01450 overlap by 4 nucleotidesAMB_RS01450 and AMB_RS01455 overlap by 4 nucleotidesAMB_RS01455 and AMB_RS01460 are separated by 178 nucleotidesAMB_RS01460 and AMB_RS01465 are separated by 107 nucleotides AMB_RS01445: AMB_RS01445 - hypothetical protein, at 314,840 to 318,310 _RS01445 AMB_RS01450: AMB_RS01450 - hypothetical protein, at 318,307 to 319,227 _RS01450 AMB_RS01455: AMB_RS01455 - DNA mismatch repair protein MutS, at 319,224 to 321,830 _RS01455 AMB_RS01460: AMB_RS01460 - hypothetical protein, at 322,009 to 322,536 _RS01460 AMB_RS01465: AMB_RS01465 - NADP-dependent malic enzyme, at 322,644 to 324,944 _RS01465 Position (kb) 319 320 321 322Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 318.542 kb on + strand, within AMB_RS01450at 318.542 kb on + strand, within AMB_RS01450at 318.543 kb on - strand, within AMB_RS01450at 318.543 kb on - strand, within AMB_RS01450at 318.543 kb on - strand, within AMB_RS01450at 318.810 kb on - strand, within AMB_RS01450at 319.246 kb on + strandat 319.246 kb on + strandat 319.246 kb on + strandat 319.246 kb on + strandat 319.247 kb on - strandat 319.247 kb on - strandat 319.247 kb on - strandat 319.501 kb on + strand, within AMB_RS01455at 319.501 kb on + strand, within AMB_RS01455at 319.502 kb on - strand, within AMB_RS01455at 319.627 kb on + strand, within AMB_RS01455at 319.627 kb on + strand, within AMB_RS01455at 319.627 kb on + strand, within AMB_RS01455at 319.627 kb on + strand, within AMB_RS01455at 319.628 kb on - strand, within AMB_RS01455at 319.628 kb on - strand, within AMB_RS01455at 319.875 kb on - strand, within AMB_RS01455at 319.955 kb on + strand, within AMB_RS01455at 319.956 kb on - strand, within AMB_RS01455at 319.956 kb on - strand, within AMB_RS01455at 319.956 kb on - strand, within AMB_RS01455at 320.324 kb on - strand, within AMB_RS01455at 320.324 kb on - strand, within AMB_RS01455at 320.324 kb on - strand, within AMB_RS01455at 320.357 kb on + strand, within AMB_RS01455at 320.358 kb on - strand, within AMB_RS01455at 320.358 kb on - strand, within AMB_RS01455at 320.359 kb on + strand, within AMB_RS01455at 320.359 kb on + strand, within AMB_RS01455at 320.359 kb on + strand, within AMB_RS01455at 320.359 kb on + strand, within AMB_RS01455at 320.359 kb on + strand, within AMB_RS01455at 320.360 kb on - strand, within AMB_RS01455at 320.360 kb on - strand, within AMB_RS01455at 320.360 kb on - strand, within AMB_RS01455at 320.360 kb on - strand, within AMB_RS01455at 320.360 kb on - strand, within AMB_RS01455at 320.402 kb on + strand, within AMB_RS01455at 320.402 kb on + strand, within AMB_RS01455at 320.402 kb on + strand, within AMB_RS01455at 320.403 kb on - strand, within AMB_RS01455at 320.403 kb on - strand, within AMB_RS01455at 320.465 kb on - strand, within AMB_RS01455at 321.115 kb on + strand, within AMB_RS01455at 321.115 kb on + strand, within AMB_RS01455at 321.116 kb on - strand, within AMB_RS01455at 321.116 kb on - strand, within AMB_RS01455at 321.116 kb on - strand, within AMB_RS01455at 321.190 kb on + strand, within AMB_RS01455at 321.190 kb on + strand, within AMB_RS01455at 321.190 kb on + strand, within AMB_RS01455at 321.190 kb on + strand, within AMB_RS01455at 321.457 kb on + strand, within AMB_RS01455at 321.457 kb on + strand, within AMB_RS01455at 321.457 kb on + strand, within AMB_RS01455at 321.457 kb on + strand, within AMB_RS01455at 321.458 kb on - strand, within AMB_RS01455at 321.458 kb on - strand, within AMB_RS01455at 321.458 kb on - strand, within AMB_RS01455at 321.615 kb on + strandat 321.616 kb on - strandat 321.640 kb on + strandat 321.641 kb on - strandat 321.757 kb on + strandat 321.758 kb on - strandat 321.776 kb on - strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.817 kb on + strandat 321.818 kb on - strandat 321.881 kb on + strandat 321.881 kb on + strandat 321.881 kb on + strandat 321.893 kb on - strandat 321.913 kb on + strandat 321.913 kb on + strandat 321.914 kb on - strandat 322.024 kb on - strandat 322.059 kb on + strandat 322.059 kb on + strandat 322.060 kb on - strandat 322.060 kb on - strandat 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.240 kb on + strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.241 kb on - strand, within AMB_RS01460at 322.463 kb on + strand, within AMB_RS01460at 322.463 kb on + strand, within AMB_RS01460at 322.464 kb on - strand, within AMB_RS01460at 322.700 kb on + strandat 322.700 kb on + strandat 322.701 kb on - strandat 322.701 kb on - strandat 322.806 kb on + strandat 322.807 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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318,542 + AMB_RS01450 0.26 -1.1
318,542 + AMB_RS01450 0.26 +0.7
318,543 - AMB_RS01450 0.26 +0.0
318,543 - AMB_RS01450 0.26 +0.4
318,543 - AMB_RS01450 0.26 -2.1
318,810 - AMB_RS01450 0.55 -1.5
319,246 + -1.1
319,246 + -1.1
319,246 + +0.7
319,246 + -1.9
319,247 - -0.3
319,247 - -0.6
319,247 - -0.3
319,501 + AMB_RS01455 0.11 -1.3
319,501 + AMB_RS01455 0.11 -0.6
319,502 - AMB_RS01455 0.11 -0.9
319,627 + AMB_RS01455 0.15 -0.2
319,627 + AMB_RS01455 0.15 -0.3
319,627 + AMB_RS01455 0.15 +0.4
319,627 + AMB_RS01455 0.15 -0.3
319,628 - AMB_RS01455 0.15 +0.5
319,628 - AMB_RS01455 0.15 +0.4
319,875 - AMB_RS01455 0.25 -0.6
319,955 + AMB_RS01455 0.28 -0.5
319,956 - AMB_RS01455 0.28 +0.0
319,956 - AMB_RS01455 0.28 -0.9
319,956 - AMB_RS01455 0.28 +0.7
320,324 - AMB_RS01455 0.42 +0.5
320,324 - AMB_RS01455 0.42 -0.7
320,324 - AMB_RS01455 0.42 +0.2
320,357 + AMB_RS01455 0.43 +0.8
320,358 - AMB_RS01455 0.43 +0.4
320,358 - AMB_RS01455 0.43 -0.1
320,359 + AMB_RS01455 0.44 +0.7
320,359 + AMB_RS01455 0.44 +0.7
320,359 + AMB_RS01455 0.44 +0.7
320,359 + AMB_RS01455 0.44 -0.5
320,359 + AMB_RS01455 0.44 -0.6
320,360 - AMB_RS01455 0.44 +0.7
320,360 - AMB_RS01455 0.44 +0.0
320,360 - AMB_RS01455 0.44 +0.2
320,360 - AMB_RS01455 0.44 -1.6
320,360 - AMB_RS01455 0.44 +0.1
320,402 + AMB_RS01455 0.45 +0.9
320,402 + AMB_RS01455 0.45 +2.1
320,402 + AMB_RS01455 0.45 +0.2
320,403 - AMB_RS01455 0.45 -0.5
320,403 - AMB_RS01455 0.45 -1.1
320,465 - AMB_RS01455 0.48 +0.9
321,115 + AMB_RS01455 0.73 -2.4
321,115 + AMB_RS01455 0.73 +1.7
321,116 - AMB_RS01455 0.73 +0.6
321,116 - AMB_RS01455 0.73 -0.1
321,116 - AMB_RS01455 0.73 -0.6
321,190 + AMB_RS01455 0.75 +0.2
321,190 + AMB_RS01455 0.75 -2.0
321,190 + AMB_RS01455 0.75 -0.9
321,190 + AMB_RS01455 0.75 -0.2
321,457 + AMB_RS01455 0.86 -0.6
321,457 + AMB_RS01455 0.86 -0.3
321,457 + AMB_RS01455 0.86 -0.4
321,457 + AMB_RS01455 0.86 +0.1
321,458 - AMB_RS01455 0.86 -2.4
321,458 - AMB_RS01455 0.86 -3.3
321,458 - AMB_RS01455 0.86 +0.2
321,615 + +0.1
321,616 - -1.5
321,640 + -1.7
321,641 - +0.1
321,757 + -0.6
321,758 - -0.2
321,776 - +0.7
321,817 + -0.5
321,817 + +1.7
321,817 + -0.3
321,817 + +1.3
321,818 - -1.3
321,881 + +0.3
321,881 + +0.1
321,881 + -2.1
321,893 - -1.3
321,913 + +0.3
321,913 + -0.2
321,914 - -1.1
322,024 - -0.6
322,059 + -1.3
322,059 + -0.1
322,060 - +0.4
322,060 - -1.7
322,240 + AMB_RS01460 0.44 +0.3
322,240 + AMB_RS01460 0.44 -0.9
322,240 + AMB_RS01460 0.44 -0.3
322,240 + AMB_RS01460 0.44 +0.1
322,240 + AMB_RS01460 0.44 -0.6
322,241 - AMB_RS01460 0.44 -2.3
322,241 - AMB_RS01460 0.44 -0.4
322,241 - AMB_RS01460 0.44 +0.0
322,463 + AMB_RS01460 0.86 -1.1
322,463 + AMB_RS01460 0.86 -0.5
322,464 - AMB_RS01460 0.86 -1.9
322,700 + -0.9
322,700 + -1.7
322,701 - +0.5
322,701 - -0.1
322,806 + -3.0
322,807 - +0.5

Or see this region's nucleotide sequence