Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01240 and AMB_RS01245 are separated by 317 nucleotides AMB_RS01245 and AMB_RS01250 are separated by 95 nucleotides AMB_RS01250 and AMB_RS01255 are separated by 92 nucleotides
AMB_RS01240: AMB_RS01240 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 276,038 to 276,796
_RS01240
AMB_RS01245: AMB_RS01245 - methyl-accepting chemotaxis protein, at 277,114 to 278,799
_RS01245
AMB_RS01250: AMB_RS01250 - hypothetical protein, at 278,895 to 279,236
_RS01250
AMB_RS01255: AMB_RS01255 - 7-carboxy-7-deazaguanine synthase, at 279,329 to 279,937
_RS01255
Position (kb) 277
278
279 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 276.134 kb on + strand, within AMB_RS01240 at 276.134 kb on + strand, within AMB_RS01240 at 276.134 kb on + strand, within AMB_RS01240 at 276.134 kb on + strand, within AMB_RS01240 at 276.134 kb on + strand, within AMB_RS01240 at 276.134 kb on + strand, within AMB_RS01240 at 276.135 kb on - strand, within AMB_RS01240 at 276.135 kb on - strand, within AMB_RS01240 at 276.135 kb on - strand, within AMB_RS01240 at 276.135 kb on - strand, within AMB_RS01240 at 276.135 kb on - strand, within AMB_RS01240 at 276.794 kb on + strand at 276.795 kb on - strand at 276.795 kb on - strand at 276.795 kb on - strand at 276.919 kb on - strand at 276.983 kb on - strand at 277.012 kb on + strand at 277.045 kb on + strand at 277.241 kb on - strand at 277.241 kb on - strand at 277.264 kb on + strand at 277.297 kb on + strand, within AMB_RS01245 at 277.297 kb on + strand, within AMB_RS01245 at 277.297 kb on + strand, within AMB_RS01245 at 277.298 kb on - strand, within AMB_RS01245 at 277.298 kb on - strand, within AMB_RS01245 at 277.298 kb on - strand, within AMB_RS01245 at 277.298 kb on - strand, within AMB_RS01245 at 277.313 kb on - strand, within AMB_RS01245 at 277.313 kb on - strand, within AMB_RS01245 at 277.397 kb on - strand, within AMB_RS01245 at 277.397 kb on - strand, within AMB_RS01245 at 277.414 kb on + strand, within AMB_RS01245 at 277.414 kb on + strand, within AMB_RS01245 at 277.415 kb on - strand, within AMB_RS01245 at 277.471 kb on + strand, within AMB_RS01245 at 277.471 kb on + strand, within AMB_RS01245 at 277.471 kb on + strand, within AMB_RS01245 at 277.472 kb on - strand, within AMB_RS01245 at 277.513 kb on + strand, within AMB_RS01245 at 277.513 kb on + strand, within AMB_RS01245 at 277.513 kb on + strand, within AMB_RS01245 at 277.582 kb on + strand, within AMB_RS01245 at 277.583 kb on - strand, within AMB_RS01245 at 277.616 kb on + strand, within AMB_RS01245 at 277.617 kb on - strand, within AMB_RS01245 at 277.678 kb on + strand, within AMB_RS01245 at 277.678 kb on + strand, within AMB_RS01245 at 277.678 kb on + strand, within AMB_RS01245 at 277.679 kb on - strand, within AMB_RS01245 at 279.189 kb on + strand, within AMB_RS01250 at 279.311 kb on + strand at 279.311 kb on + strand at 279.311 kb on + strand at 279.311 kb on + strand at 279.320 kb on - strand at 279.335 kb on + strand at 279.336 kb on - strand at 279.336 kb on - strand at 279.503 kb on + strand, within AMB_RS01255 at 279.504 kb on - strand, within AMB_RS01255
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 276,134 + AMB_RS01240 0.13 +0.4 276,134 + AMB_RS01240 0.13 +0.7 276,134 + AMB_RS01240 0.13 +0.7 276,134 + AMB_RS01240 0.13 -0.8 276,134 + AMB_RS01240 0.13 -0.8 276,134 + AMB_RS01240 0.13 -0.2 276,135 - AMB_RS01240 0.13 +0.2 276,135 - AMB_RS01240 0.13 +0.4 276,135 - AMB_RS01240 0.13 -0.2 276,135 - AMB_RS01240 0.13 +0.6 276,135 - AMB_RS01240 0.13 -1.4 276,794 + -0.4 276,795 - -2.0 276,795 - +0.0 276,795 - +0.4 276,919 - -0.2 276,983 - -0.1 277,012 + -1.0 277,045 + -0.7 277,241 - -1.8 277,241 - -0.1 277,264 + +0.1 277,297 + AMB_RS01245 0.11 +0.3 277,297 + AMB_RS01245 0.11 +0.1 277,297 + AMB_RS01245 0.11 -0.2 277,298 - AMB_RS01245 0.11 -1.4 277,298 - AMB_RS01245 0.11 +0.2 277,298 - AMB_RS01245 0.11 -0.2 277,298 - AMB_RS01245 0.11 +0.1 277,313 - AMB_RS01245 0.12 -2.0 277,313 - AMB_RS01245 0.12 +0.2 277,397 - AMB_RS01245 0.17 -1.6 277,397 - AMB_RS01245 0.17 -1.2 277,414 + AMB_RS01245 0.18 +0.1 277,414 + AMB_RS01245 0.18 -1.2 277,415 - AMB_RS01245 0.18 +0.4 277,471 + AMB_RS01245 0.21 -3.4 277,471 + AMB_RS01245 0.21 -0.8 277,471 + AMB_RS01245 0.21 -1.8 277,472 - AMB_RS01245 0.21 -0.2 277,513 + AMB_RS01245 0.24 -0.3 277,513 + AMB_RS01245 0.24 -0.3 277,513 + AMB_RS01245 0.24 +0.8 277,582 + AMB_RS01245 0.28 -2.4 277,583 - AMB_RS01245 0.28 -2.4 277,616 + AMB_RS01245 0.30 -0.3 277,617 - AMB_RS01245 0.30 -2.5 277,678 + AMB_RS01245 0.33 +1.1 277,678 + AMB_RS01245 0.33 -1.2 277,678 + AMB_RS01245 0.33 -0.2 277,679 - AMB_RS01245 0.34 -1.5 279,189 + AMB_RS01250 0.86 +0.3 279,311 + -0.2 279,311 + +0.4 279,311 + -0.6 279,311 + -0.8 279,320 - -0.6 279,335 + -0.8 279,336 - -2.7 279,336 - -0.2 279,503 + AMB_RS01255 0.29 -0.2 279,504 - AMB_RS01255 0.29 +1.1
Or see this region's nucleotide sequence