Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01220

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01215 and AMB_RS01220 are separated by 13 nucleotidesAMB_RS01220 and AMB_RS01225 overlap by 44 nucleotidesAMB_RS01225 and AMB_RS01230 overlap by 1 nucleotides AMB_RS01215: AMB_RS01215 - pyruvate carboxylase, at 268,770 to 272,234 _RS01215 AMB_RS01220: AMB_RS01220 - hypothetical protein, at 272,248 to 273,783 _RS01220 AMB_RS01225: AMB_RS01225 - tRNA pseudouridine(38-40) synthase TruA, at 273,740 to 274,510 _RS01225 AMB_RS01230: AMB_RS01230 - methionyl-tRNA formyltransferase, at 274,510 to 275,427 _RS01230 Position (kb) 272 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1at 271.278 kb on + strand, within AMB_RS01215at 271.278 kb on + strand, within AMB_RS01215at 271.278 kb on + strand, within AMB_RS01215at 271.305 kb on + strand, within AMB_RS01215at 271.305 kb on + strand, within AMB_RS01215at 271.305 kb on + strand, within AMB_RS01215at 271.306 kb on - strand, within AMB_RS01215at 271.306 kb on - strand, within AMB_RS01215at 271.374 kb on + strand, within AMB_RS01215at 271.374 kb on + strand, within AMB_RS01215at 271.374 kb on + strand, within AMB_RS01215at 271.375 kb on - strand, within AMB_RS01215at 271.375 kb on - strand, within AMB_RS01215at 271.375 kb on - strand, within AMB_RS01215at 271.722 kb on + strand, within AMB_RS01215at 271.722 kb on + strand, within AMB_RS01215at 271.723 kb on - strand, within AMB_RS01215at 271.731 kb on + strand, within AMB_RS01215at 271.731 kb on + strand, within AMB_RS01215at 271.731 kb on + strand, within AMB_RS01215at 271.732 kb on - strand, within AMB_RS01215at 271.732 kb on - strand, within AMB_RS01215at 271.732 kb on - strand, within AMB_RS01215at 271.732 kb on - strand, within AMB_RS01215at 271.773 kb on + strand, within AMB_RS01215at 271.878 kb on + strand, within AMB_RS01215at 271.878 kb on + strand, within AMB_RS01215at 271.879 kb on - strand, within AMB_RS01215at 272.232 kb on + strandat 272.232 kb on + strandat 272.232 kb on + strandat 272.233 kb on - strandat 272.233 kb on - strandat 272.326 kb on - strandat 272.350 kb on + strandat 272.443 kb on - strand, within AMB_RS01220at 272.497 kb on + strand, within AMB_RS01220at 272.497 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.530 kb on + strand, within AMB_RS01220at 272.531 kb on - strand, within AMB_RS01220at 272.531 kb on - strand, within AMB_RS01220at 272.531 kb on - strand, within AMB_RS01220at 272.548 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.800 kb on + strand, within AMB_RS01220at 272.950 kb on + strand, within AMB_RS01220at 272.950 kb on + strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.951 kb on - strand, within AMB_RS01220at 272.955 kb on + strand, within AMB_RS01220at 272.956 kb on - strand, within AMB_RS01220at 272.956 kb on - strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.175 kb on + strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.176 kb on - strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.253 kb on + strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.254 kb on - strand, within AMB_RS01220at 273.355 kb on + strand, within AMB_RS01220at 273.355 kb on + strand, within AMB_RS01220at 273.356 kb on - strand, within AMB_RS01220at 273.442 kb on + strand, within AMB_RS01220at 273.442 kb on + strand, within AMB_RS01220at 273.442 kb on + strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.443 kb on - strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.517 kb on + strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.518 kb on - strand, within AMB_RS01220at 273.637 kb on - strandat 273.637 kb on - strandat 273.724 kb on + strandat 273.724 kb on + strandat 273.900 kb on - strand, within AMB_RS01225at 274.179 kb on + strand, within AMB_RS01225at 274.179 kb on + strand, within AMB_RS01225at 274.269 kb on + strand, within AMB_RS01225at 274.269 kb on + strand, within AMB_RS01225at 274.511 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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271,278 + AMB_RS01215 0.72 -0.6
271,278 + AMB_RS01215 0.72 -2.1
271,278 + AMB_RS01215 0.72 +0.8
271,305 + AMB_RS01215 0.73 -1.4
271,305 + AMB_RS01215 0.73 -1.4
271,305 + AMB_RS01215 0.73 -0.6
271,306 - AMB_RS01215 0.73 -0.0
271,306 - AMB_RS01215 0.73 -0.2
271,374 + AMB_RS01215 0.75 -3.5
271,374 + AMB_RS01215 0.75 -0.6
271,374 + AMB_RS01215 0.75 +0.5
271,375 - AMB_RS01215 0.75 -0.5
271,375 - AMB_RS01215 0.75 +0.2
271,375 - AMB_RS01215 0.75 +1.4
271,722 + AMB_RS01215 0.85 -0.4
271,722 + AMB_RS01215 0.85 +0.8
271,723 - AMB_RS01215 0.85 +0.2
271,731 + AMB_RS01215 0.85 -2.4
271,731 + AMB_RS01215 0.85 +0.3
271,731 + AMB_RS01215 0.85 -0.0
271,732 - AMB_RS01215 0.85 +0.4
271,732 - AMB_RS01215 0.85 +0.1
271,732 - AMB_RS01215 0.85 -2.0
271,732 - AMB_RS01215 0.85 +0.2
271,773 + AMB_RS01215 0.87 -1.3
271,878 + AMB_RS01215 0.90 -0.0
271,878 + AMB_RS01215 0.90 -0.8
271,879 - AMB_RS01215 0.90 -0.8
272,232 + +0.1
272,232 + +0.1
272,232 + -0.0
272,233 - -1.2
272,233 - -0.7
272,326 - -0.6
272,350 + +0.3
272,443 - AMB_RS01220 0.13 +0.1
272,497 + AMB_RS01220 0.16 -0.2
272,497 + AMB_RS01220 0.16 -1.9
272,530 + AMB_RS01220 0.18 -1.1
272,530 + AMB_RS01220 0.18 +0.2
272,530 + AMB_RS01220 0.18 -1.9
272,530 + AMB_RS01220 0.18 +0.3
272,530 + AMB_RS01220 0.18 +0.9
272,531 - AMB_RS01220 0.18 +0.5
272,531 - AMB_RS01220 0.18 +0.3
272,531 - AMB_RS01220 0.18 +0.1
272,548 + AMB_RS01220 0.20 +0.0
272,800 + AMB_RS01220 0.36 -1.2
272,800 + AMB_RS01220 0.36 +0.4
272,800 + AMB_RS01220 0.36 -1.9
272,800 + AMB_RS01220 0.36 -0.4
272,950 + AMB_RS01220 0.46 -1.0
272,950 + AMB_RS01220 0.46 -0.6
272,951 - AMB_RS01220 0.46 -0.8
272,951 - AMB_RS01220 0.46 -0.1
272,951 - AMB_RS01220 0.46 +0.2
272,951 - AMB_RS01220 0.46 -3.7
272,955 + AMB_RS01220 0.46 -0.2
272,956 - AMB_RS01220 0.46 -0.1
272,956 - AMB_RS01220 0.46 +0.2
273,175 + AMB_RS01220 0.60 +0.8
273,175 + AMB_RS01220 0.60 -0.5
273,175 + AMB_RS01220 0.60 -0.1
273,175 + AMB_RS01220 0.60 -0.9
273,175 + AMB_RS01220 0.60 +0.3
273,176 - AMB_RS01220 0.60 -0.6
273,176 - AMB_RS01220 0.60 -0.6
273,176 - AMB_RS01220 0.60 -0.0
273,176 - AMB_RS01220 0.60 -1.2
273,176 - AMB_RS01220 0.60 -2.2
273,176 - AMB_RS01220 0.60 -0.0
273,176 - AMB_RS01220 0.60 +0.7
273,176 - AMB_RS01220 0.60 -2.4
273,176 - AMB_RS01220 0.60 -0.3
273,253 + AMB_RS01220 0.65 +0.5
273,253 + AMB_RS01220 0.65 -0.8
273,253 + AMB_RS01220 0.65 -0.2
273,253 + AMB_RS01220 0.65 -1.2
273,253 + AMB_RS01220 0.65 +1.3
273,254 - AMB_RS01220 0.65 +0.8
273,254 - AMB_RS01220 0.65 -1.0
273,254 - AMB_RS01220 0.65 -3.7
273,254 - AMB_RS01220 0.65 -1.0
273,254 - AMB_RS01220 0.65 +0.0
273,254 - AMB_RS01220 0.65 -1.0
273,254 - AMB_RS01220 0.65 +0.9
273,355 + AMB_RS01220 0.72 +0.4
273,355 + AMB_RS01220 0.72 -1.4
273,356 - AMB_RS01220 0.72 +0.1
273,442 + AMB_RS01220 0.78 +0.1
273,442 + AMB_RS01220 0.78 -0.1
273,442 + AMB_RS01220 0.78 +1.6
273,443 - AMB_RS01220 0.78 +0.3
273,443 - AMB_RS01220 0.78 -0.6
273,443 - AMB_RS01220 0.78 -0.2
273,443 - AMB_RS01220 0.78 -0.2
273,443 - AMB_RS01220 0.78 -0.6
273,517 + AMB_RS01220 0.83 -0.3
273,517 + AMB_RS01220 0.83 -1.2
273,517 + AMB_RS01220 0.83 +0.1
273,517 + AMB_RS01220 0.83 +0.1
273,517 + AMB_RS01220 0.83 +0.7
273,517 + AMB_RS01220 0.83 -0.1
273,517 + AMB_RS01220 0.83 -0.8
273,517 + AMB_RS01220 0.83 -0.6
273,517 + AMB_RS01220 0.83 -0.9
273,518 - AMB_RS01220 0.83 -1.9
273,518 - AMB_RS01220 0.83 +0.9
273,518 - AMB_RS01220 0.83 -0.8
273,518 - AMB_RS01220 0.83 +0.2
273,518 - AMB_RS01220 0.83 -0.4
273,518 - AMB_RS01220 0.83 +0.1
273,518 - AMB_RS01220 0.83 -2.1
273,518 - AMB_RS01220 0.83 +0.1
273,518 - AMB_RS01220 0.83 -1.6
273,637 - -0.2
273,637 - -0.0
273,724 + -1.5
273,724 + -0.6
273,900 - AMB_RS01225 0.21 -0.0
274,179 + AMB_RS01225 0.57 -1.2
274,179 + AMB_RS01225 0.57 -1.0
274,269 + AMB_RS01225 0.69 +0.3
274,269 + AMB_RS01225 0.69 +0.4
274,511 + +1.2

Or see this region's nucleotide sequence