Experiment: 150_an_nonmag_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01090 and AMB_RS01095 overlap by 4 nucleotides AMB_RS01095 and AMB_RS01100 are separated by 92 nucleotides AMB_RS01100 and AMB_RS01105 overlap by 4 nucleotides AMB_RS01105 and AMB_RS01110 are separated by 0 nucleotides AMB_RS01110 and AMB_RS23825 are separated by 127 nucleotides
AMB_RS01090: AMB_RS01090 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 242,547 to 243,905
_RS01090
AMB_RS01095: AMB_RS01095 - diaminopimelate epimerase, at 243,902 to 244,756
_RS01095
AMB_RS01100: AMB_RS01100 - potassium/proton antiporter, at 244,849 to 246,642
_RS01100
AMB_RS01105: AMB_RS01105 - rhodanese-like domain-containing protein, at 246,639 to 247,049
_RS01105
AMB_RS01110: AMB_RS01110 - hypothetical protein, at 247,050 to 247,445
_RS01110
AMB_RS23825: AMB_RS23825 - acylphosphatase, at 247,573 to 247,856
_RS23825
Position (kb) 244
245
246
247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.766 kb on - strand at 244.768 kb on - strand at 244.768 kb on - strand at 244.905 kb on + strand at 244.905 kb on + strand at 244.905 kb on + strand at 245.030 kb on - strand, within AMB_RS01100 at 245.182 kb on + strand, within AMB_RS01100 at 245.599 kb on + strand, within AMB_RS01100 at 245.599 kb on + strand, within AMB_RS01100 at 245.600 kb on - strand, within AMB_RS01100 at 245.938 kb on + strand, within AMB_RS01100 at 245.938 kb on + strand, within AMB_RS01100 at 246.101 kb on - strand, within AMB_RS01100 at 246.191 kb on - strand, within AMB_RS01100 at 246.354 kb on + strand, within AMB_RS01100 at 246.354 kb on + strand, within AMB_RS01100 at 246.354 kb on + strand, within AMB_RS01100 at 246.355 kb on - strand, within AMB_RS01100 at 246.377 kb on - strand, within AMB_RS01100 at 246.855 kb on + strand, within AMB_RS01105 at 246.856 kb on - strand, within AMB_RS01105 at 246.856 kb on - strand, within AMB_RS01105 at 246.858 kb on + strand, within AMB_RS01105 at 246.858 kb on + strand, within AMB_RS01105 at 246.858 kb on + strand, within AMB_RS01105 at 246.858 kb on + strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.859 kb on - strand, within AMB_RS01105 at 246.892 kb on + strand, within AMB_RS01105 at 246.893 kb on - strand, within AMB_RS01105 at 246.893 kb on - strand, within AMB_RS01105 at 246.893 kb on - strand, within AMB_RS01105 at 246.897 kb on + strand, within AMB_RS01105 at 246.897 kb on + strand, within AMB_RS01105 at 246.897 kb on + strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 246.898 kb on - strand, within AMB_RS01105 at 247.087 kb on + strand at 247.087 kb on + strand at 247.088 kb on - strand at 247.088 kb on - strand at 247.088 kb on - strand at 247.088 kb on - strand at 247.213 kb on + strand, within AMB_RS01110 at 247.214 kb on - strand, within AMB_RS01110 at 247.214 kb on - strand, within AMB_RS01110 at 247.214 kb on - strand, within AMB_RS01110 at 247.214 kb on - strand, within AMB_RS01110 at 247.216 kb on - strand, within AMB_RS01110 at 247.219 kb on + strand, within AMB_RS01110 at 247.548 kb on + strand at 247.548 kb on + strand at 247.548 kb on + strand at 247.548 kb on + strand at 247.548 kb on + strand at 247.549 kb on - strand at 247.549 kb on - strand at 247.549 kb on - strand at 247.549 kb on - strand at 247.550 kb on + strand at 247.550 kb on + strand at 247.551 kb on - strand at 247.551 kb on - strand at 247.552 kb on + strand at 247.552 kb on + strand at 247.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 150_an_nonmag_3 remove 244,766 - -2.0 244,766 - -0.6 244,766 - -0.2 244,766 - -0.2 244,766 - +0.0 244,766 - -1.0 244,766 - +0.2 244,766 - -1.9 244,766 - +0.8 244,766 - -0.2 244,766 - +0.4 244,766 - -2.0 244,768 - -0.2 244,768 - +0.4 244,905 + -0.2 244,905 + +0.6 244,905 + -1.9 245,030 - AMB_RS01100 0.10 +0.2 245,182 + AMB_RS01100 0.19 -1.9 245,599 + AMB_RS01100 0.42 -2.8 245,599 + AMB_RS01100 0.42 +0.3 245,600 - AMB_RS01100 0.42 +0.3 245,938 + AMB_RS01100 0.61 +0.2 245,938 + AMB_RS01100 0.61 +1.8 246,101 - AMB_RS01100 0.70 +1.3 246,191 - AMB_RS01100 0.75 -2.0 246,354 + AMB_RS01100 0.84 +0.1 246,354 + AMB_RS01100 0.84 -0.3 246,354 + AMB_RS01100 0.84 -1.4 246,355 - AMB_RS01100 0.84 -0.2 246,377 - AMB_RS01100 0.85 +0.5 246,855 + AMB_RS01105 0.53 -1.0 246,856 - AMB_RS01105 0.53 -0.1 246,856 - AMB_RS01105 0.53 -1.2 246,858 + AMB_RS01105 0.53 +0.2 246,858 + AMB_RS01105 0.53 -0.3 246,858 + AMB_RS01105 0.53 -0.8 246,858 + AMB_RS01105 0.53 -0.8 246,859 - AMB_RS01105 0.54 -0.6 246,859 - AMB_RS01105 0.54 -1.8 246,859 - AMB_RS01105 0.54 -1.0 246,859 - AMB_RS01105 0.54 +0.3 246,859 - AMB_RS01105 0.54 -0.6 246,859 - AMB_RS01105 0.54 +0.3 246,859 - AMB_RS01105 0.54 -0.6 246,892 + AMB_RS01105 0.62 -0.5 246,893 - AMB_RS01105 0.62 +0.4 246,893 - AMB_RS01105 0.62 -0.0 246,893 - AMB_RS01105 0.62 +0.2 246,897 + AMB_RS01105 0.63 -0.2 246,897 + AMB_RS01105 0.63 -1.6 246,897 + AMB_RS01105 0.63 +1.8 246,898 - AMB_RS01105 0.63 -0.5 246,898 - AMB_RS01105 0.63 -0.5 246,898 - AMB_RS01105 0.63 -0.4 246,898 - AMB_RS01105 0.63 +0.8 246,898 - AMB_RS01105 0.63 +1.2 247,087 + +0.6 247,087 + -2.3 247,088 - -0.2 247,088 - +1.0 247,088 - +0.2 247,088 - +0.8 247,213 + AMB_RS01110 0.41 +1.1 247,214 - AMB_RS01110 0.41 -0.8 247,214 - AMB_RS01110 0.41 -2.1 247,214 - AMB_RS01110 0.41 +0.1 247,214 - AMB_RS01110 0.41 +0.2 247,216 - AMB_RS01110 0.42 +0.2 247,219 + AMB_RS01110 0.43 -0.6 247,548 + -0.8 247,548 + -0.5 247,548 + -1.2 247,548 + -1.0 247,548 + +0.2 247,549 - -0.8 247,549 - -0.8 247,549 - -0.2 247,549 - -0.2 247,550 + -0.2 247,550 + -2.9 247,551 - -2.4 247,551 - +0.8 247,552 + -0.2 247,552 + -0.5 247,553 - +0.1
Or see this region's nucleotide sequence