Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00880

Experiment: 150_an_nonmag_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00870 and AMB_RS00875 are separated by 10 nucleotidesAMB_RS00875 and AMB_RS00880 are separated by 4 nucleotidesAMB_RS00880 and AMB_RS00885 are separated by 203 nucleotides AMB_RS00870: AMB_RS00870 - DUF4863 domain-containing protein, at 196,609 to 197,079 _RS00870 AMB_RS00875: AMB_RS00875 - alpha/beta hydrolase, at 197,090 to 197,878 _RS00875 AMB_RS00880: AMB_RS00880 - 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase, at 197,883 to 199,430 _RS00880 AMB_RS00885: AMB_RS00885 - 2,3-epoxybenzoyl-CoA dihydrolase, at 199,634 to 201,286 _RS00885 Position (kb) 197 198 199 200Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 196.979 kb on - strand, within AMB_RS00870at 196.979 kb on - strand, within AMB_RS00870at 197.035 kb on + strandat 197.035 kb on + strandat 197.035 kb on + strandat 197.035 kb on + strandat 197.036 kb on - strandat 197.036 kb on - strandat 197.036 kb on - strandat 197.036 kb on - strandat 197.036 kb on - strandat 197.144 kb on + strandat 197.144 kb on + strandat 197.145 kb on - strandat 197.276 kb on + strand, within AMB_RS00875at 197.276 kb on + strand, within AMB_RS00875at 197.276 kb on + strand, within AMB_RS00875at 197.291 kb on + strand, within AMB_RS00875at 197.333 kb on + strand, within AMB_RS00875at 197.333 kb on + strand, within AMB_RS00875at 197.333 kb on + strand, within AMB_RS00875at 197.333 kb on + strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.334 kb on - strand, within AMB_RS00875at 197.549 kb on + strand, within AMB_RS00875at 197.550 kb on - strand, within AMB_RS00875at 197.550 kb on - strand, within AMB_RS00875at 197.550 kb on - strand, within AMB_RS00875at 197.550 kb on - strand, within AMB_RS00875at 197.727 kb on - strand, within AMB_RS00875at 197.745 kb on - strand, within AMB_RS00875at 197.745 kb on - strand, within AMB_RS00875at 197.871 kb on + strandat 197.871 kb on + strandat 197.871 kb on + strandat 197.872 kb on - strandat 197.872 kb on - strandat 197.872 kb on - strandat 197.901 kb on + strandat 197.901 kb on + strandat 197.901 kb on + strandat 197.901 kb on + strandat 197.901 kb on + strandat 197.901 kb on + strandat 197.902 kb on - strandat 197.902 kb on - strandat 197.902 kb on - strandat 198.004 kb on + strandat 198.004 kb on + strandat 198.005 kb on - strandat 198.005 kb on - strandat 198.005 kb on - strandat 198.005 kb on - strandat 198.127 kb on - strand, within AMB_RS00880at 198.127 kb on - strand, within AMB_RS00880at 198.127 kb on - strand, within AMB_RS00880at 198.127 kb on - strand, within AMB_RS00880at 198.128 kb on + strand, within AMB_RS00880at 198.128 kb on + strand, within AMB_RS00880at 198.213 kb on + strand, within AMB_RS00880at 198.213 kb on + strand, within AMB_RS00880at 198.213 kb on + strand, within AMB_RS00880at 198.214 kb on - strand, within AMB_RS00880at 198.214 kb on - strand, within AMB_RS00880at 198.454 kb on - strand, within AMB_RS00880at 198.454 kb on - strand, within AMB_RS00880at 198.454 kb on - strand, within AMB_RS00880at 199.090 kb on - strand, within AMB_RS00880at 199.351 kb on - strandat 199.428 kb on + strandat 199.595 kb on + strandat 199.664 kb on + strandat 199.666 kb on - strandat 199.769 kb on + strandat 199.770 kb on - strandat 199.770 kb on - strandat 199.770 kb on - strandat 199.796 kb on + strandat 199.796 kb on + strandat 199.892 kb on - strand, within AMB_RS00885at 199.892 kb on - strand, within AMB_RS00885at 199.930 kb on + strand, within AMB_RS00885at 199.930 kb on + strand, within AMB_RS00885at 199.930 kb on + strand, within AMB_RS00885at 199.930 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.063 kb on + strand, within AMB_RS00885at 200.063 kb on + strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.209 kb on - strand, within AMB_RS00885at 200.209 kb on - strand, within AMB_RS00885at 200.209 kb on - strand, within AMB_RS00885at 200.264 kb on - strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.400 kb on - strand, within AMB_RS00885

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Per-strain Table

Position Strand Gene LocusTag Fraction 150_an_nonmag_3
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196,979 - AMB_RS00870 0.79 -1.4
196,979 - AMB_RS00870 0.79 -0.2
197,035 + -1.8
197,035 + -1.7
197,035 + +0.2
197,035 + -0.6
197,036 - -0.4
197,036 - +0.2
197,036 - -0.6
197,036 - -2.4
197,036 - -0.3
197,144 + +1.2
197,144 + +0.2
197,145 - -0.6
197,276 + AMB_RS00875 0.24 -0.0
197,276 + AMB_RS00875 0.24 +0.6
197,276 + AMB_RS00875 0.24 -0.6
197,291 + AMB_RS00875 0.25 +0.6
197,333 + AMB_RS00875 0.31 +0.1
197,333 + AMB_RS00875 0.31 -0.0
197,333 + AMB_RS00875 0.31 -0.4
197,333 + AMB_RS00875 0.31 -0.1
197,334 - AMB_RS00875 0.31 -0.6
197,334 - AMB_RS00875 0.31 -0.2
197,334 - AMB_RS00875 0.31 -0.6
197,334 - AMB_RS00875 0.31 +0.3
197,334 - AMB_RS00875 0.31 -0.2
197,334 - AMB_RS00875 0.31 +0.0
197,334 - AMB_RS00875 0.31 -0.4
197,334 - AMB_RS00875 0.31 +0.8
197,549 + AMB_RS00875 0.58 +1.2
197,550 - AMB_RS00875 0.58 +0.4
197,550 - AMB_RS00875 0.58 -0.0
197,550 - AMB_RS00875 0.58 +0.6
197,550 - AMB_RS00875 0.58 -1.0
197,727 - AMB_RS00875 0.81 -1.9
197,745 - AMB_RS00875 0.83 -0.1
197,745 - AMB_RS00875 0.83 +0.3
197,871 + +0.8
197,871 + -0.4
197,871 + +0.2
197,872 - -0.2
197,872 - +0.8
197,872 - +0.2
197,901 + -0.6
197,901 + -1.0
197,901 + -0.0
197,901 + -0.2
197,901 + -1.7
197,901 + +0.5
197,902 - -0.6
197,902 - +0.0
197,902 - -0.1
198,004 + -0.8
198,004 + +0.4
198,005 - +0.6
198,005 - +0.8
198,005 - -0.2
198,005 - +0.6
198,127 - AMB_RS00880 0.16 -1.9
198,127 - AMB_RS00880 0.16 +0.0
198,127 - AMB_RS00880 0.16 -0.7
198,127 - AMB_RS00880 0.16 -0.6
198,128 + AMB_RS00880 0.16 -0.2
198,128 + AMB_RS00880 0.16 -3.4
198,213 + AMB_RS00880 0.21 -0.8
198,213 + AMB_RS00880 0.21 -0.8
198,213 + AMB_RS00880 0.21 -0.2
198,214 - AMB_RS00880 0.21 -0.2
198,214 - AMB_RS00880 0.21 -0.6
198,454 - AMB_RS00880 0.37 +1.5
198,454 - AMB_RS00880 0.37 +1.0
198,454 - AMB_RS00880 0.37 +0.6
199,090 - AMB_RS00880 0.78 -1.2
199,351 - -1.8
199,428 + -0.0
199,595 + +0.2
199,664 + -0.6
199,666 - +0.1
199,769 + -0.1
199,770 - -0.0
199,770 - +1.3
199,770 - -2.7
199,796 + -0.1
199,796 + -0.8
199,892 - AMB_RS00885 0.16 -0.3
199,892 - AMB_RS00885 0.16 -0.6
199,930 + AMB_RS00885 0.18 -0.8
199,930 + AMB_RS00885 0.18 -0.2
199,930 + AMB_RS00885 0.18 +0.2
199,930 + AMB_RS00885 0.18 +0.2
200,000 + AMB_RS00885 0.22 +0.2
200,000 + AMB_RS00885 0.22 -1.5
200,000 + AMB_RS00885 0.22 -0.3
200,000 + AMB_RS00885 0.22 -0.7
200,000 + AMB_RS00885 0.22 +0.1
200,001 - AMB_RS00885 0.22 -0.3
200,001 - AMB_RS00885 0.22 -1.8
200,001 - AMB_RS00885 0.22 +1.8
200,001 - AMB_RS00885 0.22 +2.5
200,001 - AMB_RS00885 0.22 +0.7
200,063 + AMB_RS00885 0.26 -0.8
200,063 + AMB_RS00885 0.26 +0.1
200,064 - AMB_RS00885 0.26 -0.8
200,064 - AMB_RS00885 0.26 -0.6
200,064 - AMB_RS00885 0.26 +0.8
200,064 - AMB_RS00885 0.26 -1.4
200,064 - AMB_RS00885 0.26 +0.1
200,208 + AMB_RS00885 0.35 -0.3
200,208 + AMB_RS00885 0.35 -2.3
200,208 + AMB_RS00885 0.35 -0.7
200,208 + AMB_RS00885 0.35 -0.8
200,208 + AMB_RS00885 0.35 -1.4
200,209 - AMB_RS00885 0.35 +0.0
200,209 - AMB_RS00885 0.35 +0.2
200,209 - AMB_RS00885 0.35 +0.8
200,264 - AMB_RS00885 0.38 -1.2
200,399 + AMB_RS00885 0.46 -1.1
200,399 + AMB_RS00885 0.46 +1.8
200,399 + AMB_RS00885 0.46 -0.5
200,399 + AMB_RS00885 0.46 +0.1
200,399 + AMB_RS00885 0.46 +1.8
200,400 - AMB_RS00885 0.46 -2.2

Or see this region's nucleotide sequence