Strain Fitness in Escherichia coli BW25113 around b2834

Experiment: Spectinomycin 0.0125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Spectinomycin 0.0125 mg/ml
2,968,620	-	ygdQ	b2832	0.25	-1.4
2,968,620	-	ygdQ	b2832	0.25	-0.4
2,968,648	+	ygdQ	b2832	0.29	+0.2
2,968,648	+	ygdQ	b2832	0.29	-1.3
2,968,674	+	ygdQ	b2832	0.32	+0.4
2,968,786	-	ygdQ	b2832	0.48	+0.3
2,968,829	+	ygdQ	b2832	0.54	+1.0
2,968,856	-	ygdQ	b2832	0.58	+0.8
2,968,880	+	ygdQ	b2832	0.61	-0.7
2,968,942	+	ygdQ	b2832	0.70	+0.1
2,968,942	+	ygdQ	b2832	0.70	-0.6
2,968,955	-	ygdQ	b2832	0.72	+0.3
2,969,039	-	ygdQ	b2832	0.84	-0.3
2,969,039	-	ygdQ	b2832	0.84	-0.2
2,969,108	-				+0.5
2,969,108	-				-0.2
2,969,160	-				-0.8
2,969,160	-				+0.6
2,969,164	+				-0.5
2,969,172	-				+1.3
2,969,172	-				+1.0
2,969,193	+				-1.1
2,969,193	-				+0.2
2,969,202	-				+0.6
2,969,231	+				-0.0
2,969,242	-				+1.8
2,969,263	+				+0.4
2,969,263	+				+1.2
2,969,280	-				+0.6
2,969,281	-				+0.5
2,969,286	-				+0.7
2,969,327	+	ygdR	b2833	0.16	+0.9
2,969,426	+	ygdR	b2833	0.61	+0.5
2,969,439	+	ygdR	b2833	0.67	+0.2
2,969,439	+	ygdR	b2833	0.67	-0.3
2,969,454	+	ygdR	b2833	0.74	+1.2
2,969,457	+	ygdR	b2833	0.75	-0.4
2,969,457	+	ygdR	b2833	0.75	+0.4
2,969,457	+	ygdR	b2833	0.75	-0.1
2,969,458	-	ygdR	b2833	0.75	-1.6
2,969,467	-	ygdR	b2833	0.79	+0.4
2,969,616	+				+0.4
2,969,636	+				+0.3
2,969,642	-				-0.1
2,969,654	+				+0.8
2,969,693	+				-0.1
2,969,699	-				+1.0
2,969,746	+	tas	b2834	0.12	+0.4
2,969,746	+	tas	b2834	0.12	-0.1
2,969,753	-	tas	b2834	0.13	-0.1
2,969,755	-	tas	b2834	0.13	+0.4
2,969,872	+	tas	b2834	0.24	-0.6
2,969,872	+	tas	b2834	0.24	+0.4
2,969,912	-	tas	b2834	0.28	-1.0
2,969,917	+	tas	b2834	0.29	-0.0
2,969,976	-	tas	b2834	0.34	+1.0
2,969,976	-	tas	b2834	0.34	+2.0
2,969,984	-	tas	b2834	0.35	+0.4
2,969,993	+	tas	b2834	0.36	+1.0
2,970,254	-	tas	b2834	0.61	-0.0
2,970,254	-	tas	b2834	0.61	+0.4
2,970,283	-	tas	b2834	0.64	+0.3
2,970,290	+	tas	b2834	0.64	-1.5
2,970,324	-	tas	b2834	0.68	+0.3
2,970,336	+	tas	b2834	0.69	+0.7
2,970,336	+	tas	b2834	0.69	+0.5
2,970,410	+	tas	b2834	0.76	+0.3
2,970,471	+	tas	b2834	0.82	+0.9
2,970,471	+	tas	b2834	0.82	-0.2
2,970,480	-	tas	b2834	0.83	-0.0
2,970,499	+	tas	b2834	0.85	+0.5
2,970,499	+	tas	b2834	0.85	-1.4
2,970,601	-				+1.0
2,970,635	+				+0.2
2,970,635	+				+1.0
2,970,654	+				-0.3
2,970,654	+				+0.4
2,970,654	+				-0.7
2,970,710	+				+0.6
2,970,781	-				+1.4
2,970,781	-				+0.4
2,970,900	-	ygeD	b2835	0.18	-1.5
2,970,970	-	ygeD	b2835	0.23	-0.6
2,971,028	+	ygeD	b2835	0.28	+0.4
2,971,028	+	ygeD	b2835	0.28	-1.0
2,971,031	-	ygeD	b2835	0.28	+0.4
2,971,031	-	ygeD	b2835	0.28	+0.1
2,971,033	-	ygeD	b2835	0.29	-0.1
2,971,068	-	ygeD	b2835	0.32	+0.2
2,971,154	-	ygeD	b2835	0.39	-0.0
2,971,180	+	ygeD	b2835	0.41	-0.0
2,971,303	-	ygeD	b2835	0.51	+2.0
2,971,305	+	ygeD	b2835	0.51	-0.8
2,971,360	+	ygeD	b2835	0.56	-0.1
2,971,360	+	ygeD	b2835	0.56	-0.2
2,971,438	-	ygeD	b2835	0.63	+0.8
2,971,489	+	ygeD	b2835	0.67	+0.2
2,971,489	+	ygeD	b2835	0.67	+2.0
2,971,489	+	ygeD	b2835	0.67	+0.5
2,971,571	-	ygeD	b2835	0.74	+1.2
2,971,581	+	ygeD	b2835	0.75	+0.2
2,971,617	+	ygeD	b2835	0.78	+1.1
2,971,625	-	ygeD	b2835	0.78	+1.0
2,971,625	-	ygeD	b2835	0.78	-0.7
2,971,634	+	ygeD	b2835	0.79	+0.3
2,971,656	-	ygeD	b2835	0.81	+1.2
2,971,656	-	ygeD	b2835	0.81	+1.0