Strain Fitness in Escherichia coli BW25113 around b1659
Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.0125 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,736,132 | + | purR | b1658 | 0.26 | +1.3 |
1,736,147 | - | purR | b1658 | 0.27 | +0.3 |
1,736,235 | - | purR | b1658 | 0.36 | +1.3 |
1,736,243 | - | purR | b1658 | 0.37 | +1.0 |
1,736,255 | + | purR | b1658 | 0.38 | -0.4 |
1,736,255 | + | purR | b1658 | 0.38 | -0.1 |
1,736,297 | + | purR | b1658 | 0.42 | +0.8 |
1,736,319 | + | purR | b1658 | 0.44 | +0.9 |
1,736,347 | - | purR | b1658 | 0.47 | +0.7 |
1,736,506 | + | purR | b1658 | 0.62 | +0.6 |
1,736,506 | + | purR | b1658 | 0.62 | +2.2 |
1,736,688 | + | purR | b1658 | 0.80 | +1.2 |
1,736,728 | + | purR | b1658 | 0.84 | +0.3 |
1,736,728 | + | purR | b1658 | 0.84 | +1.8 |
1,736,766 | - | purR | b1658 | 0.88 | +0.3 |
1,736,820 | + | +0.7 | |||
1,736,820 | - | +1.9 | |||
1,736,843 | + | +1.4 | |||
1,736,965 | + | -2.2 | |||
1,737,011 | + | ydhB | b1659 | 0.13 | -0.7 |
1,737,229 | - | ydhB | b1659 | 0.36 | -2.7 |
1,737,332 | + | ydhB | b1659 | 0.47 | +0.3 |
1,737,436 | - | +0.6 | |||
1,737,689 | + | ydhB | b1659 | 0.86 | +1.1 |
1,737,719 | + | ydhB | b1659 | 0.89 | -0.4 |
1,738,071 | + | ydhC | b1660 | 0.11 | -1.0 |
1,738,195 | - | ydhC | b1660 | 0.21 | -0.4 |
1,738,195 | - | ydhC | b1660 | 0.21 | -0.2 |
1,738,203 | + | ydhC | b1660 | 0.22 | +0.6 |
1,738,203 | + | ydhC | b1660 | 0.22 | +0.6 |
1,738,723 | - | ydhC | b1660 | 0.65 | +0.6 |
1,738,723 | - | ydhC | b1660 | 0.65 | -0.1 |
Or see this region's nucleotide sequence