Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3786

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3784 and PfGW456L13_3785 overlap by 4 nucleotidesPfGW456L13_3785 and PfGW456L13_3786 are separated by 257 nucleotidesPfGW456L13_3786 and PfGW456L13_3787 are separated by 53 nucleotidesPfGW456L13_3787 and PfGW456L13_3788 are separated by 133 nucleotides PfGW456L13_3784 - Uncharacterized conserved protein, contains double-stranded beta-helix domain, at 4,257,719 to 4,258,162 _3784 PfGW456L13_3785 - putative membrane protein, at 4,258,159 to 4,258,890 _3785 PfGW456L13_3786 - Phosphatidylcholine synthase (EC 2.7.8.24), at 4,259,148 to 4,259,870 _3786 PfGW456L13_3787 - hypothetical protein, at 4,259,924 to 4,260,259 _3787 PfGW456L13_3788 - PUTATIVE METHYLTRANSFERASE, at 4,260,393 to 4,261,205 _3788 Position (kb) 4259 4260Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4258.161 kb on - strandat 4258.244 kb on + strand, within PfGW456L13_3785at 4258.244 kb on + strand, within PfGW456L13_3785at 4258.244 kb on + strand, within PfGW456L13_3785at 4258.244 kb on + strand, within PfGW456L13_3785at 4258.245 kb on - strand, within PfGW456L13_3785at 4258.245 kb on - strand, within PfGW456L13_3785at 4258.245 kb on - strand, within PfGW456L13_3785at 4258.245 kb on - strand, within PfGW456L13_3785at 4258.295 kb on + strand, within PfGW456L13_3785at 4258.295 kb on + strand, within PfGW456L13_3785at 4258.295 kb on + strand, within PfGW456L13_3785at 4258.295 kb on + strand, within PfGW456L13_3785at 4258.295 kb on + strand, within PfGW456L13_3785at 4258.295 kb on + strand, within PfGW456L13_3785at 4258.296 kb on - strand, within PfGW456L13_3785at 4258.296 kb on - strand, within PfGW456L13_3785at 4258.296 kb on - strand, within PfGW456L13_3785at 4258.296 kb on - strand, within PfGW456L13_3785at 4258.296 kb on - strand, within PfGW456L13_3785at 4258.343 kb on + strand, within PfGW456L13_3785at 4258.343 kb on + strand, within PfGW456L13_3785at 4258.593 kb on - strand, within PfGW456L13_3785at 4258.593 kb on - strand, within PfGW456L13_3785at 4258.634 kb on + strand, within PfGW456L13_3785at 4258.634 kb on + strand, within PfGW456L13_3785at 4258.635 kb on - strand, within PfGW456L13_3785at 4258.635 kb on - strand, within PfGW456L13_3785at 4258.861 kb on + strandat 4258.861 kb on + strandat 4258.861 kb on + strandat 4258.862 kb on - strandat 4258.862 kb on - strandat 4259.023 kb on + strandat 4259.023 kb on + strandat 4259.023 kb on + strandat 4259.024 kb on - strandat 4259.024 kb on - strandat 4259.024 kb on - strandat 4259.047 kb on - strandat 4259.047 kb on - strandat 4259.163 kb on + strandat 4259.163 kb on + strandat 4259.164 kb on - strandat 4259.164 kb on - strandat 4259.164 kb on - strandat 4259.164 kb on - strandat 4259.164 kb on - strandat 4259.164 kb on - strandat 4259.164 kb on - strandat 4259.348 kb on - strand, within PfGW456L13_3786at 4259.391 kb on + strand, within PfGW456L13_3786at 4259.391 kb on + strand, within PfGW456L13_3786at 4259.391 kb on + strand, within PfGW456L13_3786at 4259.400 kb on + strand, within PfGW456L13_3786at 4259.400 kb on + strand, within PfGW456L13_3786at 4259.400 kb on + strand, within PfGW456L13_3786at 4259.400 kb on + strand, within PfGW456L13_3786at 4259.400 kb on + strand, within PfGW456L13_3786at 4259.400 kb on + strand, within PfGW456L13_3786at 4259.400 kb on + strand, within PfGW456L13_3786at 4259.401 kb on - strand, within PfGW456L13_3786at 4259.401 kb on - strand, within PfGW456L13_3786at 4259.401 kb on - strand, within PfGW456L13_3786at 4259.401 kb on - strand, within PfGW456L13_3786at 4259.401 kb on - strand, within PfGW456L13_3786at 4259.401 kb on - strand, within PfGW456L13_3786at 4259.401 kb on - strand, within PfGW456L13_3786at 4259.423 kb on + strand, within PfGW456L13_3786at 4259.423 kb on + strand, within PfGW456L13_3786at 4259.424 kb on - strand, within PfGW456L13_3786at 4259.424 kb on - strand, within PfGW456L13_3786at 4259.424 kb on - strand, within PfGW456L13_3786at 4259.427 kb on + strand, within PfGW456L13_3786at 4259.427 kb on + strand, within PfGW456L13_3786at 4259.427 kb on + strand, within PfGW456L13_3786at 4259.427 kb on + strand, within PfGW456L13_3786at 4259.427 kb on + strand, within PfGW456L13_3786at 4259.428 kb on - strand, within PfGW456L13_3786at 4259.428 kb on - strand, within PfGW456L13_3786at 4259.428 kb on - strand, within PfGW456L13_3786at 4259.428 kb on - strand, within PfGW456L13_3786at 4259.428 kb on - strand, within PfGW456L13_3786at 4259.428 kb on - strand, within PfGW456L13_3786at 4259.428 kb on - strand, within PfGW456L13_3786at 4259.428 kb on - strand, within PfGW456L13_3786at 4259.433 kb on + strand, within PfGW456L13_3786at 4259.433 kb on + strand, within PfGW456L13_3786at 4259.433 kb on + strand, within PfGW456L13_3786at 4259.433 kb on + strand, within PfGW456L13_3786at 4259.433 kb on + strand, within PfGW456L13_3786at 4259.433 kb on + strand, within PfGW456L13_3786at 4259.434 kb on - strand, within PfGW456L13_3786at 4259.434 kb on - strand, within PfGW456L13_3786at 4259.434 kb on - strand, within PfGW456L13_3786at 4259.451 kb on + strand, within PfGW456L13_3786at 4259.451 kb on + strand, within PfGW456L13_3786at 4259.452 kb on - strand, within PfGW456L13_3786at 4259.535 kb on + strand, within PfGW456L13_3786at 4259.535 kb on + strand, within PfGW456L13_3786at 4259.536 kb on - strand, within PfGW456L13_3786at 4259.536 kb on - strand, within PfGW456L13_3786at 4259.536 kb on - strand, within PfGW456L13_3786at 4259.584 kb on - strand, within PfGW456L13_3786at 4259.584 kb on - strand, within PfGW456L13_3786at 4259.584 kb on - strand, within PfGW456L13_3786at 4259.584 kb on - strand, within PfGW456L13_3786at 4259.584 kb on - strand, within PfGW456L13_3786at 4259.584 kb on - strand, within PfGW456L13_3786at 4259.618 kb on + strand, within PfGW456L13_3786at 4259.618 kb on + strand, within PfGW456L13_3786at 4259.618 kb on + strand, within PfGW456L13_3786at 4259.618 kb on + strand, within PfGW456L13_3786at 4259.619 kb on - strand, within PfGW456L13_3786at 4259.619 kb on - strand, within PfGW456L13_3786at 4259.805 kb on + strandat 4259.805 kb on + strandat 4259.806 kb on - strandat 4259.868 kb on + strandat 4259.869 kb on - strandat 4259.869 kb on - strandat 4259.941 kb on - strandat 4259.962 kb on - strand, within PfGW456L13_3787at 4259.993 kb on + strand, within PfGW456L13_3787at 4259.993 kb on + strand, within PfGW456L13_3787at 4259.993 kb on + strand, within PfGW456L13_3787at 4259.993 kb on + strand, within PfGW456L13_3787at 4259.993 kb on + strand, within PfGW456L13_3787at 4259.993 kb on + strand, within PfGW456L13_3787at 4259.993 kb on + strand, within PfGW456L13_3787at 4259.994 kb on - strand, within PfGW456L13_3787at 4260.129 kb on + strand, within PfGW456L13_3787at 4260.258 kb on - strandat 4260.421 kb on + strandat 4260.421 kb on + strandat 4260.421 kb on + strandat 4260.422 kb on - strandat 4260.422 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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4,258,161 - +0.7
4,258,244 + PfGW456L13_3785 0.12 +1.0
4,258,244 + PfGW456L13_3785 0.12 -0.4
4,258,244 + PfGW456L13_3785 0.12 -3.4
4,258,244 + PfGW456L13_3785 0.12 -0.1
4,258,245 - PfGW456L13_3785 0.12 -1.9
4,258,245 - PfGW456L13_3785 0.12 +0.1
4,258,245 - PfGW456L13_3785 0.12 -0.7
4,258,245 - PfGW456L13_3785 0.12 -1.6
4,258,295 + PfGW456L13_3785 0.19 +0.1
4,258,295 + PfGW456L13_3785 0.19 -0.7
4,258,295 + PfGW456L13_3785 0.19 +0.6
4,258,295 + PfGW456L13_3785 0.19 -0.9
4,258,295 + PfGW456L13_3785 0.19 -1.3
4,258,295 + PfGW456L13_3785 0.19 -0.6
4,258,296 - PfGW456L13_3785 0.19 -0.4
4,258,296 - PfGW456L13_3785 0.19 -1.2
4,258,296 - PfGW456L13_3785 0.19 +1.5
4,258,296 - PfGW456L13_3785 0.19 -0.2
4,258,296 - PfGW456L13_3785 0.19 -0.8
4,258,343 + PfGW456L13_3785 0.25 +0.0
4,258,343 + PfGW456L13_3785 0.25 -0.1
4,258,593 - PfGW456L13_3785 0.59 -0.9
4,258,593 - PfGW456L13_3785 0.59 -0.0
4,258,634 + PfGW456L13_3785 0.65 -0.4
4,258,634 + PfGW456L13_3785 0.65 -0.4
4,258,635 - PfGW456L13_3785 0.65 -0.4
4,258,635 - PfGW456L13_3785 0.65 -0.4
4,258,861 + +0.7
4,258,861 + -0.2
4,258,861 + -0.7
4,258,862 - -1.1
4,258,862 - +0.8
4,259,023 + -1.1
4,259,023 + +1.0
4,259,023 + -0.7
4,259,024 - +1.6
4,259,024 - -0.6
4,259,024 - +0.9
4,259,047 - +0.5
4,259,047 - -1.4
4,259,163 + -0.4
4,259,163 + +0.6
4,259,164 - -1.6
4,259,164 - -0.2
4,259,164 - +0.0
4,259,164 - +0.5
4,259,164 - +1.2
4,259,164 - -1.6
4,259,164 - +0.1
4,259,348 - PfGW456L13_3786 0.28 -1.0
4,259,391 + PfGW456L13_3786 0.34 +0.3
4,259,391 + PfGW456L13_3786 0.34 +0.4
4,259,391 + PfGW456L13_3786 0.34 -0.6
4,259,400 + PfGW456L13_3786 0.35 +1.2
4,259,400 + PfGW456L13_3786 0.35 -1.4
4,259,400 + PfGW456L13_3786 0.35 -1.0
4,259,400 + PfGW456L13_3786 0.35 -0.7
4,259,400 + PfGW456L13_3786 0.35 -0.9
4,259,400 + PfGW456L13_3786 0.35 +0.6
4,259,400 + PfGW456L13_3786 0.35 +0.7
4,259,401 - PfGW456L13_3786 0.35 -0.3
4,259,401 - PfGW456L13_3786 0.35 +1.0
4,259,401 - PfGW456L13_3786 0.35 +0.2
4,259,401 - PfGW456L13_3786 0.35 +1.0
4,259,401 - PfGW456L13_3786 0.35 +0.6
4,259,401 - PfGW456L13_3786 0.35 -0.9
4,259,401 - PfGW456L13_3786 0.35 +1.6
4,259,423 + PfGW456L13_3786 0.38 +0.3
4,259,423 + PfGW456L13_3786 0.38 +0.3
4,259,424 - PfGW456L13_3786 0.38 -0.6
4,259,424 - PfGW456L13_3786 0.38 -0.4
4,259,424 - PfGW456L13_3786 0.38 -0.7
4,259,427 + PfGW456L13_3786 0.39 -3.2
4,259,427 + PfGW456L13_3786 0.39 +0.6
4,259,427 + PfGW456L13_3786 0.39 -1.3
4,259,427 + PfGW456L13_3786 0.39 -0.0
4,259,427 + PfGW456L13_3786 0.39 +0.9
4,259,428 - PfGW456L13_3786 0.39 -0.3
4,259,428 - PfGW456L13_3786 0.39 +0.4
4,259,428 - PfGW456L13_3786 0.39 +0.5
4,259,428 - PfGW456L13_3786 0.39 -0.5
4,259,428 - PfGW456L13_3786 0.39 +0.4
4,259,428 - PfGW456L13_3786 0.39 -0.6
4,259,428 - PfGW456L13_3786 0.39 +0.8
4,259,428 - PfGW456L13_3786 0.39 -3.2
4,259,433 + PfGW456L13_3786 0.39 -0.3
4,259,433 + PfGW456L13_3786 0.39 -2.0
4,259,433 + PfGW456L13_3786 0.39 -0.7
4,259,433 + PfGW456L13_3786 0.39 +2.0
4,259,433 + PfGW456L13_3786 0.39 -0.3
4,259,433 + PfGW456L13_3786 0.39 -3.9
4,259,434 - PfGW456L13_3786 0.40 +0.6
4,259,434 - PfGW456L13_3786 0.40 -2.0
4,259,434 - PfGW456L13_3786 0.40 +0.7
4,259,451 + PfGW456L13_3786 0.42 +0.0
4,259,451 + PfGW456L13_3786 0.42 +0.8
4,259,452 - PfGW456L13_3786 0.42 -1.2
4,259,535 + PfGW456L13_3786 0.54 -0.6
4,259,535 + PfGW456L13_3786 0.54 +1.4
4,259,536 - PfGW456L13_3786 0.54 -0.2
4,259,536 - PfGW456L13_3786 0.54 +0.4
4,259,536 - PfGW456L13_3786 0.54 +0.5
4,259,584 - PfGW456L13_3786 0.60 -1.6
4,259,584 - PfGW456L13_3786 0.60 -1.9
4,259,584 - PfGW456L13_3786 0.60 +1.4
4,259,584 - PfGW456L13_3786 0.60 +0.4
4,259,584 - PfGW456L13_3786 0.60 +0.2
4,259,584 - PfGW456L13_3786 0.60 +0.5
4,259,618 + PfGW456L13_3786 0.65 +0.3
4,259,618 + PfGW456L13_3786 0.65 -0.5
4,259,618 + PfGW456L13_3786 0.65 -0.1
4,259,618 + PfGW456L13_3786 0.65 -3.8
4,259,619 - PfGW456L13_3786 0.65 -0.8
4,259,619 - PfGW456L13_3786 0.65 -0.5
4,259,805 + -0.2
4,259,805 + +1.1
4,259,806 - +0.9
4,259,868 + +0.9
4,259,869 - -2.2
4,259,869 - +0.7
4,259,941 - +0.8
4,259,962 - PfGW456L13_3787 0.11 -0.8
4,259,993 + PfGW456L13_3787 0.21 -0.3
4,259,993 + PfGW456L13_3787 0.21 +0.8
4,259,993 + PfGW456L13_3787 0.21 -1.1
4,259,993 + PfGW456L13_3787 0.21 +1.1
4,259,993 + PfGW456L13_3787 0.21 +0.3
4,259,993 + PfGW456L13_3787 0.21 -0.1
4,259,993 + PfGW456L13_3787 0.21 -0.3
4,259,994 - PfGW456L13_3787 0.21 -0.1
4,260,129 + PfGW456L13_3787 0.61 -0.7
4,260,258 - +0.7
4,260,421 + -0.9
4,260,421 + +0.3
4,260,421 + -1.1
4,260,422 - -3.1
4,260,422 - +1.5

Or see this region's nucleotide sequence