Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1231

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1230 and PfGW456L13_1231 are separated by 93 nucleotidesPfGW456L13_1231 and PfGW456L13_1232 are separated by 33 nucleotidesPfGW456L13_1232 and PfGW456L13_1233 are separated by 135 nucleotides PfGW456L13_1230 - FIG00954311: hypothetical protein, at 1,371,308 to 1,372,273 _1230 PfGW456L13_1231 - 2-nitropropane dioxygenase (EC 1.13.11.32), at 1,372,367 to 1,373,335 _1231 PfGW456L13_1232 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 1,373,369 to 1,373,797 _1232 PfGW456L13_1233 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 1,373,933 to 1,374,967 _1233 Position (kb) 1372 1373 1374Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1371.423 kb on + strand, within PfGW456L13_1230at 1371.423 kb on + strand, within PfGW456L13_1230at 1371.448 kb on - strand, within PfGW456L13_1230at 1371.448 kb on - strand, within PfGW456L13_1230at 1371.448 kb on - strand, within PfGW456L13_1230at 1371.497 kb on + strand, within PfGW456L13_1230at 1371.497 kb on + strand, within PfGW456L13_1230at 1371.497 kb on + strand, within PfGW456L13_1230at 1371.497 kb on + strand, within PfGW456L13_1230at 1371.497 kb on + strand, within PfGW456L13_1230at 1371.497 kb on + strand, within PfGW456L13_1230at 1371.498 kb on - strand, within PfGW456L13_1230at 1371.498 kb on - strand, within PfGW456L13_1230at 1371.498 kb on - strand, within PfGW456L13_1230at 1371.530 kb on + strand, within PfGW456L13_1230at 1371.531 kb on - strand, within PfGW456L13_1230at 1371.531 kb on - strand, within PfGW456L13_1230at 1371.716 kb on + strand, within PfGW456L13_1230at 1371.717 kb on - strand, within PfGW456L13_1230at 1371.737 kb on - strand, within PfGW456L13_1230at 1371.958 kb on - strand, within PfGW456L13_1230at 1371.958 kb on - strand, within PfGW456L13_1230at 1372.092 kb on + strand, within PfGW456L13_1230at 1372.092 kb on + strand, within PfGW456L13_1230at 1372.092 kb on + strand, within PfGW456L13_1230at 1372.092 kb on + strand, within PfGW456L13_1230at 1372.092 kb on + strand, within PfGW456L13_1230at 1372.093 kb on - strand, within PfGW456L13_1230at 1372.093 kb on - strand, within PfGW456L13_1230at 1372.093 kb on - strand, within PfGW456L13_1230at 1372.093 kb on - strand, within PfGW456L13_1230at 1372.093 kb on - strand, within PfGW456L13_1230at 1372.331 kb on + strandat 1372.331 kb on + strandat 1372.331 kb on + strandat 1372.331 kb on + strandat 1372.331 kb on + strandat 1372.331 kb on + strandat 1372.332 kb on - strandat 1372.651 kb on + strand, within PfGW456L13_1231at 1372.651 kb on + strand, within PfGW456L13_1231at 1372.651 kb on + strand, within PfGW456L13_1231at 1372.651 kb on + strand, within PfGW456L13_1231at 1372.651 kb on + strand, within PfGW456L13_1231at 1372.652 kb on - strand, within PfGW456L13_1231at 1372.652 kb on - strand, within PfGW456L13_1231at 1372.696 kb on - strand, within PfGW456L13_1231at 1372.696 kb on - strand, within PfGW456L13_1231at 1372.738 kb on + strand, within PfGW456L13_1231at 1372.739 kb on - strand, within PfGW456L13_1231at 1372.746 kb on + strand, within PfGW456L13_1231at 1372.746 kb on + strand, within PfGW456L13_1231at 1372.746 kb on + strand, within PfGW456L13_1231at 1372.986 kb on + strand, within PfGW456L13_1231at 1372.987 kb on - strand, within PfGW456L13_1231at 1373.081 kb on + strand, within PfGW456L13_1231at 1373.081 kb on + strand, within PfGW456L13_1231at 1373.121 kb on + strand, within PfGW456L13_1231at 1373.121 kb on + strand, within PfGW456L13_1231at 1373.121 kb on + strand, within PfGW456L13_1231at 1373.121 kb on + strand, within PfGW456L13_1231at 1373.250 kb on - strandat 1373.370 kb on + strandat 1373.371 kb on - strandat 1373.822 kb on + strandat 1373.832 kb on - strandat 1373.832 kb on - strandat 1373.832 kb on - strandat 1373.832 kb on - strandat 1373.832 kb on - strandat 1373.834 kb on + strandat 1373.834 kb on + strandat 1373.835 kb on - strandat 1373.891 kb on + strandat 1373.892 kb on - strandat 1373.894 kb on + strandat 1373.933 kb on - strandat 1373.933 kb on - strandat 1373.933 kb on - strandat 1373.966 kb on + strandat 1374.068 kb on + strand, within PfGW456L13_1233at 1374.068 kb on + strand, within PfGW456L13_1233at 1374.069 kb on - strand, within PfGW456L13_1233at 1374.069 kb on - strand, within PfGW456L13_1233at 1374.069 kb on - strand, within PfGW456L13_1233at 1374.069 kb on - strand, within PfGW456L13_1233at 1374.089 kb on + strand, within PfGW456L13_1233at 1374.317 kb on + strand, within PfGW456L13_1233

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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1,371,423 + PfGW456L13_1230 0.12 -0.7
1,371,423 + PfGW456L13_1230 0.12 +0.3
1,371,448 - PfGW456L13_1230 0.14 -2.6
1,371,448 - PfGW456L13_1230 0.14 +0.0
1,371,448 - PfGW456L13_1230 0.14 +0.3
1,371,497 + PfGW456L13_1230 0.20 -0.6
1,371,497 + PfGW456L13_1230 0.20 +0.7
1,371,497 + PfGW456L13_1230 0.20 +1.2
1,371,497 + PfGW456L13_1230 0.20 +1.3
1,371,497 + PfGW456L13_1230 0.20 +1.2
1,371,497 + PfGW456L13_1230 0.20 +0.2
1,371,498 - PfGW456L13_1230 0.20 -1.0
1,371,498 - PfGW456L13_1230 0.20 -0.3
1,371,498 - PfGW456L13_1230 0.20 +0.1
1,371,530 + PfGW456L13_1230 0.23 -0.7
1,371,531 - PfGW456L13_1230 0.23 +1.2
1,371,531 - PfGW456L13_1230 0.23 +0.8
1,371,716 + PfGW456L13_1230 0.42 +0.3
1,371,717 - PfGW456L13_1230 0.42 +0.9
1,371,737 - PfGW456L13_1230 0.44 +1.2
1,371,958 - PfGW456L13_1230 0.67 +0.8
1,371,958 - PfGW456L13_1230 0.67 +0.6
1,372,092 + PfGW456L13_1230 0.81 +0.7
1,372,092 + PfGW456L13_1230 0.81 -0.3
1,372,092 + PfGW456L13_1230 0.81 -1.1
1,372,092 + PfGW456L13_1230 0.81 +0.6
1,372,092 + PfGW456L13_1230 0.81 +1.5
1,372,093 - PfGW456L13_1230 0.81 +0.3
1,372,093 - PfGW456L13_1230 0.81 -0.3
1,372,093 - PfGW456L13_1230 0.81 +0.3
1,372,093 - PfGW456L13_1230 0.81 -0.6
1,372,093 - PfGW456L13_1230 0.81 -0.4
1,372,331 + -0.3
1,372,331 + +0.8
1,372,331 + +1.1
1,372,331 + +0.6
1,372,331 + -1.8
1,372,331 + +0.2
1,372,332 - -3.0
1,372,651 + PfGW456L13_1231 0.29 -0.2
1,372,651 + PfGW456L13_1231 0.29 -0.3
1,372,651 + PfGW456L13_1231 0.29 -2.7
1,372,651 + PfGW456L13_1231 0.29 -2.3
1,372,651 + PfGW456L13_1231 0.29 -0.5
1,372,652 - PfGW456L13_1231 0.29 +0.2
1,372,652 - PfGW456L13_1231 0.29 +0.6
1,372,696 - PfGW456L13_1231 0.34 +0.5
1,372,696 - PfGW456L13_1231 0.34 +0.7
1,372,738 + PfGW456L13_1231 0.38 -0.3
1,372,739 - PfGW456L13_1231 0.38 -1.8
1,372,746 + PfGW456L13_1231 0.39 +1.0
1,372,746 + PfGW456L13_1231 0.39 -0.1
1,372,746 + PfGW456L13_1231 0.39 -0.9
1,372,986 + PfGW456L13_1231 0.64 -1.4
1,372,987 - PfGW456L13_1231 0.64 +0.9
1,373,081 + PfGW456L13_1231 0.74 +0.6
1,373,081 + PfGW456L13_1231 0.74 +0.4
1,373,121 + PfGW456L13_1231 0.78 +0.4
1,373,121 + PfGW456L13_1231 0.78 -1.6
1,373,121 + PfGW456L13_1231 0.78 -2.2
1,373,121 + PfGW456L13_1231 0.78 -0.5
1,373,250 - +0.8
1,373,370 + -0.4
1,373,371 - -4.0
1,373,822 + +1.2
1,373,832 - +0.3
1,373,832 - +0.9
1,373,832 - -0.3
1,373,832 - -1.3
1,373,832 - -0.8
1,373,834 + -1.2
1,373,834 + +0.1
1,373,835 - -0.2
1,373,891 + +1.7
1,373,892 - -0.6
1,373,894 + -0.9
1,373,933 - -1.5
1,373,933 - -3.0
1,373,933 - -3.0
1,373,966 + -2.8
1,374,068 + PfGW456L13_1233 0.13 -4.2
1,374,068 + PfGW456L13_1233 0.13 -2.5
1,374,069 - PfGW456L13_1233 0.13 -2.0
1,374,069 - PfGW456L13_1233 0.13 -2.7
1,374,069 - PfGW456L13_1233 0.13 -1.9
1,374,069 - PfGW456L13_1233 0.13 -3.1
1,374,089 + PfGW456L13_1233 0.15 -4.5
1,374,317 + PfGW456L13_1233 0.37 -2.5

Or see this region's nucleotide sequence