Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4380

Experiment: m.b. Lomefloxacin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4379 and Echvi_4380 overlap by 1 nucleotidesEchvi_4380 and Echvi_4381 are separated by 330 nucleotides Echvi_4379: Echvi_4379 - Signal transduction histidine kinase, at 5,235,840 to 5,237,672 _4379 Echvi_4380: Echvi_4380 - hypothetical protein, at 5,237,672 to 5,237,866 _4380 Echvi_4381: Echvi_4381 - Type IV secretory pathway, VirD4 components, at 5,238,197 to 5,240,179 _4381 Position (kb) 5237 5238Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 5236.779 kb on + strand, within Echvi_4379at 5236.780 kb on - strand, within Echvi_4379at 5236.814 kb on + strand, within Echvi_4379at 5236.814 kb on + strand, within Echvi_4379at 5236.815 kb on - strand, within Echvi_4379at 5236.815 kb on - strand, within Echvi_4379at 5236.816 kb on + strand, within Echvi_4379at 5236.816 kb on + strand, within Echvi_4379at 5236.816 kb on + strand, within Echvi_4379at 5236.817 kb on - strand, within Echvi_4379at 5236.817 kb on - strand, within Echvi_4379at 5236.867 kb on - strand, within Echvi_4379at 5236.907 kb on + strand, within Echvi_4379at 5236.907 kb on + strand, within Echvi_4379at 5236.908 kb on - strand, within Echvi_4379at 5236.928 kb on + strand, within Echvi_4379at 5236.928 kb on + strand, within Echvi_4379at 5236.929 kb on - strand, within Echvi_4379at 5237.048 kb on + strand, within Echvi_4379at 5237.066 kb on - strand, within Echvi_4379at 5237.107 kb on - strand, within Echvi_4379at 5237.107 kb on - strand, within Echvi_4379at 5237.124 kb on - strand, within Echvi_4379at 5237.125 kb on + strand, within Echvi_4379at 5237.125 kb on + strand, within Echvi_4379at 5237.125 kb on + strand, within Echvi_4379at 5237.125 kb on + strand, within Echvi_4379at 5237.126 kb on - strand, within Echvi_4379at 5237.126 kb on - strand, within Echvi_4379at 5237.126 kb on - strand, within Echvi_4379at 5237.126 kb on - strand, within Echvi_4379at 5237.147 kb on + strand, within Echvi_4379at 5237.159 kb on + strand, within Echvi_4379at 5237.160 kb on - strand, within Echvi_4379at 5237.238 kb on + strand, within Echvi_4379at 5237.238 kb on + strand, within Echvi_4379at 5237.238 kb on + strand, within Echvi_4379at 5237.238 kb on + strand, within Echvi_4379at 5237.239 kb on - strand, within Echvi_4379at 5237.239 kb on - strand, within Echvi_4379at 5237.239 kb on - strand, within Echvi_4379at 5237.239 kb on - strand, within Echvi_4379at 5237.241 kb on - strand, within Echvi_4379at 5237.241 kb on - strand, within Echvi_4379at 5237.281 kb on + strand, within Echvi_4379at 5237.283 kb on + strand, within Echvi_4379at 5237.284 kb on - strand, within Echvi_4379at 5237.284 kb on - strand, within Echvi_4379at 5237.302 kb on + strand, within Echvi_4379at 5237.302 kb on + strand, within Echvi_4379at 5237.303 kb on - strand, within Echvi_4379at 5237.303 kb on - strand, within Echvi_4379at 5237.303 kb on - strand, within Echvi_4379at 5237.303 kb on - strand, within Echvi_4379at 5237.323 kb on - strand, within Echvi_4379at 5237.418 kb on - strand, within Echvi_4379at 5237.418 kb on - strand, within Echvi_4379at 5237.451 kb on + strand, within Echvi_4379at 5237.452 kb on - strand, within Echvi_4379at 5237.461 kb on + strand, within Echvi_4379at 5237.461 kb on + strand, within Echvi_4379at 5237.488 kb on - strand, within Echvi_4379at 5237.627 kb on - strandat 5237.710 kb on + strand, within Echvi_4380at 5237.813 kb on + strand, within Echvi_4380at 5237.819 kb on - strand, within Echvi_4380at 5237.819 kb on - strand, within Echvi_4380at 5237.819 kb on - strand, within Echvi_4380at 5237.836 kb on - strand, within Echvi_4380at 5237.847 kb on - strandat 5237.848 kb on + strandat 5237.857 kb on + strandat 5237.858 kb on - strandat 5237.858 kb on - strandat 5237.858 kb on - strandat 5237.858 kb on - strandat 5237.907 kb on - strandat 5237.910 kb on + strandat 5237.924 kb on - strandat 5237.928 kb on - strandat 5238.014 kb on + strandat 5238.058 kb on + strandat 5238.058 kb on + strandat 5238.058 kb on + strandat 5238.059 kb on - strandat 5238.114 kb on + strandat 5238.115 kb on - strandat 5238.120 kb on - strandat 5238.135 kb on + strandat 5238.135 kb on + strandat 5238.263 kb on + strandat 5238.484 kb on + strand, within Echvi_4381at 5238.512 kb on + strand, within Echvi_4381at 5238.532 kb on + strand, within Echvi_4381at 5238.679 kb on - strand, within Echvi_4381at 5238.853 kb on + strand, within Echvi_4381at 5238.854 kb on - strand, within Echvi_4381at 5238.856 kb on - strand, within Echvi_4381

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM
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5,236,779 + Echvi_4379 0.51 -0.2
5,236,780 - Echvi_4379 0.51 +0.9
5,236,814 + Echvi_4379 0.53 +0.4
5,236,814 + Echvi_4379 0.53 -0.8
5,236,815 - Echvi_4379 0.53 +0.3
5,236,815 - Echvi_4379 0.53 -0.1
5,236,816 + Echvi_4379 0.53 -0.4
5,236,816 + Echvi_4379 0.53 -1.8
5,236,816 + Echvi_4379 0.53 +0.2
5,236,817 - Echvi_4379 0.53 -1.3
5,236,817 - Echvi_4379 0.53 +0.6
5,236,867 - Echvi_4379 0.56 -0.3
5,236,907 + Echvi_4379 0.58 -2.1
5,236,907 + Echvi_4379 0.58 -0.5
5,236,908 - Echvi_4379 0.58 -1.2
5,236,928 + Echvi_4379 0.59 +0.1
5,236,928 + Echvi_4379 0.59 +0.4
5,236,929 - Echvi_4379 0.59 -0.1
5,237,048 + Echvi_4379 0.66 +2.0
5,237,066 - Echvi_4379 0.67 -0.3
5,237,107 - Echvi_4379 0.69 +0.0
5,237,107 - Echvi_4379 0.69 -0.3
5,237,124 - Echvi_4379 0.70 +0.8
5,237,125 + Echvi_4379 0.70 +0.2
5,237,125 + Echvi_4379 0.70 +0.3
5,237,125 + Echvi_4379 0.70 +0.4
5,237,125 + Echvi_4379 0.70 +0.2
5,237,126 - Echvi_4379 0.70 +0.5
5,237,126 - Echvi_4379 0.70 +0.6
5,237,126 - Echvi_4379 0.70 +1.2
5,237,126 - Echvi_4379 0.70 +0.8
5,237,147 + Echvi_4379 0.71 +1.7
5,237,159 + Echvi_4379 0.72 -0.3
5,237,160 - Echvi_4379 0.72 -0.5
5,237,238 + Echvi_4379 0.76 -0.4
5,237,238 + Echvi_4379 0.76 +0.5
5,237,238 + Echvi_4379 0.76 +1.9
5,237,238 + Echvi_4379 0.76 -0.8
5,237,239 - Echvi_4379 0.76 +5.2
5,237,239 - Echvi_4379 0.76 -0.8
5,237,239 - Echvi_4379 0.76 +0.9
5,237,239 - Echvi_4379 0.76 -1.1
5,237,241 - Echvi_4379 0.76 -0.3
5,237,241 - Echvi_4379 0.76 +0.4
5,237,281 + Echvi_4379 0.79 +1.2
5,237,283 + Echvi_4379 0.79 -1.8
5,237,284 - Echvi_4379 0.79 +0.6
5,237,284 - Echvi_4379 0.79 +2.2
5,237,302 + Echvi_4379 0.80 -1.1
5,237,302 + Echvi_4379 0.80 -0.4
5,237,303 - Echvi_4379 0.80 +0.3
5,237,303 - Echvi_4379 0.80 -0.6
5,237,303 - Echvi_4379 0.80 +1.0
5,237,303 - Echvi_4379 0.80 +0.1
5,237,323 - Echvi_4379 0.81 +1.2
5,237,418 - Echvi_4379 0.86 +0.0
5,237,418 - Echvi_4379 0.86 -0.6
5,237,451 + Echvi_4379 0.88 -0.6
5,237,452 - Echvi_4379 0.88 -1.1
5,237,461 + Echvi_4379 0.88 -1.4
5,237,461 + Echvi_4379 0.88 -1.5
5,237,488 - Echvi_4379 0.90 +1.0
5,237,627 - -1.8
5,237,710 + Echvi_4380 0.19 -0.1
5,237,813 + Echvi_4380 0.72 +0.2
5,237,819 - Echvi_4380 0.75 -0.8
5,237,819 - Echvi_4380 0.75 -2.5
5,237,819 - Echvi_4380 0.75 -1.7
5,237,836 - Echvi_4380 0.84 -0.1
5,237,847 - +0.7
5,237,848 + -0.1
5,237,857 + -1.1
5,237,858 - -1.0
5,237,858 - -0.4
5,237,858 - +0.9
5,237,858 - -2.3
5,237,907 - -1.8
5,237,910 + -1.8
5,237,924 - +0.0
5,237,928 - +1.1
5,238,014 + -1.0
5,238,058 + -0.7
5,238,058 + +0.9
5,238,058 + +0.4
5,238,059 - +0.6
5,238,114 + +1.0
5,238,115 - -0.6
5,238,120 - +0.1
5,238,135 + +1.4
5,238,135 + +0.5
5,238,263 + -0.0
5,238,484 + Echvi_4381 0.14 -0.1
5,238,512 + Echvi_4381 0.16 -1.2
5,238,532 + Echvi_4381 0.17 +0.5
5,238,679 - Echvi_4381 0.24 +0.2
5,238,853 + Echvi_4381 0.33 -0.2
5,238,854 - Echvi_4381 0.33 +0.8
5,238,856 - Echvi_4381 0.33 -0.1

Or see this region's nucleotide sequence