Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2643

Experiment: m.b. Lomefloxacin 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2640 and Echvi_2641 are separated by 135 nucleotidesEchvi_2641 and Echvi_2642 are separated by 88 nucleotidesEchvi_2642 and Echvi_2643 are separated by 282 nucleotidesEchvi_2643 and Echvi_2644 are separated by 169 nucleotidesEchvi_2644 and Echvi_2645 are separated by 98 nucleotides Echvi_2640: Echvi_2640 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 3,130,297 to 3,130,929 _2640 Echvi_2641: Echvi_2641 - tRNA, at 3,131,065 to 3,131,138 _2641 Echvi_2642: Echvi_2642 - DNA binding domain, excisionase family, at 3,131,227 to 3,131,568 _2642 Echvi_2643: Echvi_2643 - hypothetical protein, at 3,131,851 to 3,133,005 _2643 Echvi_2644: Echvi_2644 - hypothetical protein, at 3,133,175 to 3,133,744 _2644 Echvi_2645: Echvi_2645 - hypothetical protein, at 3,133,843 to 3,134,610 _2645 Position (kb) 3131 3132 3133 3134Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3130.885 kb on + strandat 3130.885 kb on + strandat 3130.886 kb on - strandat 3130.918 kb on - strandat 3130.960 kb on + strandat 3131.288 kb on - strand, within Echvi_2642at 3131.364 kb on + strand, within Echvi_2642at 3131.364 kb on + strand, within Echvi_2642at 3131.364 kb on + strandat 3131.364 kb on + strand, within Echvi_2642at 3131.365 kb on - strand, within Echvi_2642at 3131.365 kb on - strand, within Echvi_2642at 3131.367 kb on - strand, within Echvi_2642at 3131.367 kb on - strand, within Echvi_2642at 3131.393 kb on + strand, within Echvi_2642at 3131.394 kb on - strand, within Echvi_2642at 3131.397 kb on + strand, within Echvi_2642at 3131.397 kb on + strand, within Echvi_2642at 3131.398 kb on - strand, within Echvi_2642at 3131.398 kb on - strand, within Echvi_2642at 3131.399 kb on + strand, within Echvi_2642at 3131.399 kb on + strand, within Echvi_2642at 3131.399 kb on + strand, within Echvi_2642at 3131.399 kb on + strand, within Echvi_2642at 3131.399 kb on + strand, within Echvi_2642at 3131.399 kb on + strand, within Echvi_2642at 3131.400 kb on - strand, within Echvi_2642at 3131.422 kb on + strand, within Echvi_2642at 3131.423 kb on - strand, within Echvi_2642at 3131.460 kb on + strand, within Echvi_2642at 3131.491 kb on + strand, within Echvi_2642at 3131.491 kb on + strand, within Echvi_2642at 3131.491 kb on + strand, within Echvi_2642at 3131.491 kb on + strand, within Echvi_2642at 3131.492 kb on - strand, within Echvi_2642at 3131.522 kb on - strand, within Echvi_2642at 3131.546 kb on - strandat 3131.574 kb on - strandat 3131.609 kb on + strandat 3131.638 kb on + strandat 3131.639 kb on - strandat 3131.663 kb on + strandat 3131.664 kb on - strandat 3131.718 kb on + strandat 3131.768 kb on - strandat 3131.815 kb on + strandat 3131.815 kb on + strandat 3131.817 kb on + strandat 3131.817 kb on + strandat 3131.821 kb on + strandat 3131.821 kb on + strandat 3131.823 kb on + strandat 3131.829 kb on + strandat 3131.938 kb on - strandat 3131.938 kb on - strandat 3131.954 kb on - strandat 3131.980 kb on - strand, within Echvi_2643at 3131.986 kb on - strand, within Echvi_2643at 3131.991 kb on + strand, within Echvi_2643at 3132.004 kb on + strand, within Echvi_2643at 3132.067 kb on + strand, within Echvi_2643at 3132.111 kb on + strand, within Echvi_2643at 3132.136 kb on + strand, within Echvi_2643at 3132.136 kb on + strand, within Echvi_2643at 3132.136 kb on + strand, within Echvi_2643at 3132.137 kb on - strandat 3132.137 kb on - strand, within Echvi_2643at 3132.208 kb on - strand, within Echvi_2643at 3132.218 kb on - strand, within Echvi_2643at 3132.240 kb on + strand, within Echvi_2643at 3132.241 kb on - strand, within Echvi_2643at 3132.241 kb on - strand, within Echvi_2643at 3132.241 kb on - strand, within Echvi_2643at 3132.243 kb on + strand, within Echvi_2643at 3132.243 kb on + strand, within Echvi_2643at 3132.244 kb on - strand, within Echvi_2643at 3132.249 kb on + strand, within Echvi_2643at 3132.270 kb on + strand, within Echvi_2643at 3132.271 kb on - strand, within Echvi_2643at 3132.279 kb on + strand, within Echvi_2643at 3132.280 kb on - strand, within Echvi_2643at 3132.280 kb on - strand, within Echvi_2643at 3132.351 kb on + strand, within Echvi_2643at 3132.382 kb on + strand, within Echvi_2643at 3132.434 kb on - strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.438 kb on + strand, within Echvi_2643at 3132.439 kb on - strand, within Echvi_2643at 3132.439 kb on - strand, within Echvi_2643at 3132.439 kb on - strand, within Echvi_2643at 3132.446 kb on + strand, within Echvi_2643at 3132.461 kb on + strand, within Echvi_2643at 3132.461 kb on + strand, within Echvi_2643at 3132.461 kb on + strand, within Echvi_2643at 3132.467 kb on - strand, within Echvi_2643at 3132.498 kb on + strand, within Echvi_2643at 3132.499 kb on - strand, within Echvi_2643at 3132.499 kb on - strand, within Echvi_2643at 3132.552 kb on + strand, within Echvi_2643at 3132.552 kb on + strand, within Echvi_2643at 3132.552 kb on + strand, within Echvi_2643at 3132.552 kb on + strand, within Echvi_2643at 3132.553 kb on - strand, within Echvi_2643at 3132.554 kb on + strand, within Echvi_2643at 3132.555 kb on - strand, within Echvi_2643at 3132.564 kb on + strand, within Echvi_2643at 3132.564 kb on + strand, within Echvi_2643at 3132.564 kb on + strand, within Echvi_2643at 3132.565 kb on - strand, within Echvi_2643at 3132.565 kb on - strand, within Echvi_2643at 3132.592 kb on + strand, within Echvi_2643at 3132.630 kb on + strand, within Echvi_2643at 3132.639 kb on + strand, within Echvi_2643at 3132.669 kb on + strand, within Echvi_2643at 3132.677 kb on - strand, within Echvi_2643at 3132.680 kb on - strand, within Echvi_2643at 3132.701 kb on + strand, within Echvi_2643at 3132.702 kb on - strand, within Echvi_2643at 3132.739 kb on - strand, within Echvi_2643at 3132.751 kb on + strand, within Echvi_2643at 3132.752 kb on - strand, within Echvi_2643at 3132.815 kb on - strand, within Echvi_2643at 3132.829 kb on + strand, within Echvi_2643at 3132.830 kb on - strand, within Echvi_2643at 3132.833 kb on - strand, within Echvi_2643at 3132.838 kb on - strand, within Echvi_2643at 3132.838 kb on - strand, within Echvi_2643at 3132.906 kb on + strandat 3132.946 kb on + strandat 3132.973 kb on - strandat 3133.109 kb on + strandat 3133.129 kb on + strandat 3133.130 kb on - strandat 3133.141 kb on + strandat 3133.156 kb on - strandat 3133.169 kb on - strandat 3133.217 kb on - strandat 3133.220 kb on + strandat 3133.256 kb on - strand, within Echvi_2644at 3133.258 kb on - strand, within Echvi_2644at 3133.304 kb on - strand, within Echvi_2644at 3133.472 kb on - strand, within Echvi_2644at 3133.484 kb on - strand, within Echvi_2644at 3133.572 kb on - strand, within Echvi_2644at 3133.572 kb on - strand, within Echvi_2644at 3133.574 kb on + strand, within Echvi_2644at 3133.575 kb on - strand, within Echvi_2644at 3133.575 kb on - strand, within Echvi_2644at 3133.608 kb on + strand, within Echvi_2644at 3133.621 kb on - strand, within Echvi_2644at 3133.628 kb on - strand, within Echvi_2644at 3133.661 kb on + strand, within Echvi_2644at 3133.705 kb on + strandat 3133.708 kb on - strandat 3133.708 kb on - strandat 3133.746 kb on - strandat 3133.816 kb on - strandat 3133.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM
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3,130,885 + -3.5
3,130,885 + -0.1
3,130,886 - +1.0
3,130,918 - -0.7
3,130,960 + +1.2
3,131,288 - Echvi_2642 0.18 +2.2
3,131,364 + Echvi_2642 0.40 +0.4
3,131,364 + Echvi_2642 0.40 +1.1
3,131,364 + +1.2
3,131,364 + Echvi_2642 0.40 +0.3
3,131,365 - Echvi_2642 0.40 -2.5
3,131,365 - Echvi_2642 0.40 +1.0
3,131,367 - Echvi_2642 0.41 -0.6
3,131,367 - Echvi_2642 0.41 -1.9
3,131,393 + Echvi_2642 0.49 -1.0
3,131,394 - Echvi_2642 0.49 +0.1
3,131,397 + Echvi_2642 0.50 -0.0
3,131,397 + Echvi_2642 0.50 +1.0
3,131,398 - Echvi_2642 0.50 -0.6
3,131,398 - Echvi_2642 0.50 -1.5
3,131,399 + Echvi_2642 0.50 -0.9
3,131,399 + Echvi_2642 0.50 +1.4
3,131,399 + Echvi_2642 0.50 -1.3
3,131,399 + Echvi_2642 0.50 -0.5
3,131,399 + Echvi_2642 0.50 -0.4
3,131,399 + Echvi_2642 0.50 +0.1
3,131,400 - Echvi_2642 0.51 -0.3
3,131,422 + Echvi_2642 0.57 -0.8
3,131,423 - Echvi_2642 0.57 -1.3
3,131,460 + Echvi_2642 0.68 -0.4
3,131,491 + Echvi_2642 0.77 +0.4
3,131,491 + Echvi_2642 0.77 +0.5
3,131,491 + Echvi_2642 0.77 +0.4
3,131,491 + Echvi_2642 0.77 +0.2
3,131,492 - Echvi_2642 0.77 -1.5
3,131,522 - Echvi_2642 0.86 +0.6
3,131,546 - +0.3
3,131,574 - -2.0
3,131,609 + -0.2
3,131,638 + -0.4
3,131,639 - -0.3
3,131,663 + -0.7
3,131,664 - +0.2
3,131,718 + -0.7
3,131,768 - +0.4
3,131,815 + -0.1
3,131,815 + -1.2
3,131,817 + -1.5
3,131,817 + -1.4
3,131,821 + -1.5
3,131,821 + -1.1
3,131,823 + -0.7
3,131,829 + +0.6
3,131,938 - +0.2
3,131,938 - -0.1
3,131,954 - +0.3
3,131,980 - Echvi_2643 0.11 -0.4
3,131,986 - Echvi_2643 0.12 +0.5
3,131,991 + Echvi_2643 0.12 -1.6
3,132,004 + Echvi_2643 0.13 -1.3
3,132,067 + Echvi_2643 0.19 +0.0
3,132,111 + Echvi_2643 0.23 -0.3
3,132,136 + Echvi_2643 0.25 +1.7
3,132,136 + Echvi_2643 0.25 -1.1
3,132,136 + Echvi_2643 0.25 -0.3
3,132,137 - -0.1
3,132,137 - Echvi_2643 0.25 -0.2
3,132,208 - Echvi_2643 0.31 -1.0
3,132,218 - Echvi_2643 0.32 -0.4
3,132,240 + Echvi_2643 0.34 -1.6
3,132,241 - Echvi_2643 0.34 -0.8
3,132,241 - Echvi_2643 0.34 -0.5
3,132,241 - Echvi_2643 0.34 -0.6
3,132,243 + Echvi_2643 0.34 -0.7
3,132,243 + Echvi_2643 0.34 -3.1
3,132,244 - Echvi_2643 0.34 +0.6
3,132,249 + Echvi_2643 0.34 -0.4
3,132,270 + Echvi_2643 0.36 -2.3
3,132,271 - Echvi_2643 0.36 -0.6
3,132,279 + Echvi_2643 0.37 -1.4
3,132,280 - Echvi_2643 0.37 -1.5
3,132,280 - Echvi_2643 0.37 -0.7
3,132,351 + Echvi_2643 0.43 -0.6
3,132,382 + Echvi_2643 0.46 -0.6
3,132,434 - Echvi_2643 0.50 -2.3
3,132,438 + Echvi_2643 0.51 -0.1
3,132,438 + Echvi_2643 0.51 +0.8
3,132,438 + Echvi_2643 0.51 -0.4
3,132,438 + Echvi_2643 0.51 -0.0
3,132,438 + Echvi_2643 0.51 +0.4
3,132,438 + Echvi_2643 0.51 -1.1
3,132,439 - Echvi_2643 0.51 -0.7
3,132,439 - Echvi_2643 0.51 -0.2
3,132,439 - Echvi_2643 0.51 +1.2
3,132,446 + Echvi_2643 0.52 -0.4
3,132,461 + Echvi_2643 0.53 -0.4
3,132,461 + Echvi_2643 0.53 -0.1
3,132,461 + Echvi_2643 0.53 -0.9
3,132,467 - Echvi_2643 0.53 -0.1
3,132,498 + Echvi_2643 0.56 -0.7
3,132,499 - Echvi_2643 0.56 -1.0
3,132,499 - Echvi_2643 0.56 -0.4
3,132,552 + Echvi_2643 0.61 +0.3
3,132,552 + Echvi_2643 0.61 +0.6
3,132,552 + Echvi_2643 0.61 -1.1
3,132,552 + Echvi_2643 0.61 +0.6
3,132,553 - Echvi_2643 0.61 +0.1
3,132,554 + Echvi_2643 0.61 +0.4
3,132,555 - Echvi_2643 0.61 +0.3
3,132,564 + Echvi_2643 0.62 -0.7
3,132,564 + Echvi_2643 0.62 -0.3
3,132,564 + Echvi_2643 0.62 -0.9
3,132,565 - Echvi_2643 0.62 +0.7
3,132,565 - Echvi_2643 0.62 -0.6
3,132,592 + Echvi_2643 0.64 +0.3
3,132,630 + Echvi_2643 0.67 -1.8
3,132,639 + Echvi_2643 0.68 -0.6
3,132,669 + Echvi_2643 0.71 -0.3
3,132,677 - Echvi_2643 0.72 +0.4
3,132,680 - Echvi_2643 0.72 -1.1
3,132,701 + Echvi_2643 0.74 -1.9
3,132,702 - Echvi_2643 0.74 +0.4
3,132,739 - Echvi_2643 0.77 -1.1
3,132,751 + Echvi_2643 0.78 -0.4
3,132,752 - Echvi_2643 0.78 +0.2
3,132,815 - Echvi_2643 0.83 -0.2
3,132,829 + Echvi_2643 0.85 +0.1
3,132,830 - Echvi_2643 0.85 -1.1
3,132,833 - Echvi_2643 0.85 +1.7
3,132,838 - Echvi_2643 0.85 +0.3
3,132,838 - Echvi_2643 0.85 -0.7
3,132,906 + -3.1
3,132,946 + -0.6
3,132,973 - +0.2
3,133,109 + -0.9
3,133,129 + -0.9
3,133,130 - +0.9
3,133,141 + -1.4
3,133,156 - -1.3
3,133,169 - -0.0
3,133,217 - +0.1
3,133,220 + +2.6
3,133,256 - Echvi_2644 0.14 +0.8
3,133,258 - Echvi_2644 0.15 -0.1
3,133,304 - Echvi_2644 0.23 +1.8
3,133,472 - Echvi_2644 0.52 -1.4
3,133,484 - Echvi_2644 0.54 +0.1
3,133,572 - Echvi_2644 0.70 -1.0
3,133,572 - Echvi_2644 0.70 +0.1
3,133,574 + Echvi_2644 0.70 -1.4
3,133,575 - Echvi_2644 0.70 -0.5
3,133,575 - Echvi_2644 0.70 -0.9
3,133,608 + Echvi_2644 0.76 -0.9
3,133,621 - Echvi_2644 0.78 +0.3
3,133,628 - Echvi_2644 0.79 -0.9
3,133,661 + Echvi_2644 0.85 -2.7
3,133,705 + -0.4
3,133,708 - -1.2
3,133,708 - -0.0
3,133,746 - +0.3
3,133,816 - +1.1
3,133,850 - -1.5

Or see this region's nucleotide sequence