Experiment: m.b. Lomefloxacin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2640 and Echvi_2641 are separated by 135 nucleotides Echvi_2641 and Echvi_2642 are separated by 88 nucleotides Echvi_2642 and Echvi_2643 are separated by 282 nucleotides Echvi_2643 and Echvi_2644 are separated by 169 nucleotides Echvi_2644 and Echvi_2645 are separated by 98 nucleotides
Echvi_2640: Echvi_2640 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 3,130,297 to 3,130,929
_2640
Echvi_2641: Echvi_2641 - tRNA, at 3,131,065 to 3,131,138
_2641
Echvi_2642: Echvi_2642 - DNA binding domain, excisionase family, at 3,131,227 to 3,131,568
_2642
Echvi_2643: Echvi_2643 - hypothetical protein, at 3,131,851 to 3,133,005
_2643
Echvi_2644: Echvi_2644 - hypothetical protein, at 3,133,175 to 3,133,744
_2644
Echvi_2645: Echvi_2645 - hypothetical protein, at 3,133,843 to 3,134,610
_2645
Position (kb)
3131
3132
3133
3134 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3130.885 kb on + strand at 3130.885 kb on + strand at 3130.886 kb on - strand at 3130.918 kb on - strand at 3130.960 kb on + strand at 3131.288 kb on - strand, within Echvi_2642 at 3131.364 kb on + strand, within Echvi_2642 at 3131.364 kb on + strand, within Echvi_2642 at 3131.364 kb on + strand at 3131.364 kb on + strand, within Echvi_2642 at 3131.365 kb on - strand, within Echvi_2642 at 3131.365 kb on - strand, within Echvi_2642 at 3131.367 kb on - strand, within Echvi_2642 at 3131.367 kb on - strand, within Echvi_2642 at 3131.393 kb on + strand, within Echvi_2642 at 3131.394 kb on - strand, within Echvi_2642 at 3131.397 kb on + strand, within Echvi_2642 at 3131.397 kb on + strand, within Echvi_2642 at 3131.398 kb on - strand, within Echvi_2642 at 3131.398 kb on - strand, within Echvi_2642 at 3131.399 kb on + strand, within Echvi_2642 at 3131.399 kb on + strand, within Echvi_2642 at 3131.399 kb on + strand, within Echvi_2642 at 3131.399 kb on + strand, within Echvi_2642 at 3131.399 kb on + strand, within Echvi_2642 at 3131.399 kb on + strand, within Echvi_2642 at 3131.400 kb on - strand, within Echvi_2642 at 3131.422 kb on + strand, within Echvi_2642 at 3131.423 kb on - strand, within Echvi_2642 at 3131.460 kb on + strand, within Echvi_2642 at 3131.491 kb on + strand, within Echvi_2642 at 3131.491 kb on + strand, within Echvi_2642 at 3131.491 kb on + strand, within Echvi_2642 at 3131.491 kb on + strand, within Echvi_2642 at 3131.492 kb on - strand, within Echvi_2642 at 3131.522 kb on - strand, within Echvi_2642 at 3131.546 kb on - strand at 3131.574 kb on - strand at 3131.609 kb on + strand at 3131.638 kb on + strand at 3131.639 kb on - strand at 3131.663 kb on + strand at 3131.664 kb on - strand at 3131.718 kb on + strand at 3131.768 kb on - strand at 3131.815 kb on + strand at 3131.815 kb on + strand at 3131.817 kb on + strand at 3131.817 kb on + strand at 3131.821 kb on + strand at 3131.821 kb on + strand at 3131.823 kb on + strand at 3131.829 kb on + strand at 3131.938 kb on - strand at 3131.938 kb on - strand at 3131.954 kb on - strand at 3131.980 kb on - strand, within Echvi_2643 at 3131.986 kb on - strand, within Echvi_2643 at 3131.991 kb on + strand, within Echvi_2643 at 3132.004 kb on + strand, within Echvi_2643 at 3132.067 kb on + strand, within Echvi_2643 at 3132.111 kb on + strand, within Echvi_2643 at 3132.136 kb on + strand, within Echvi_2643 at 3132.136 kb on + strand, within Echvi_2643 at 3132.136 kb on + strand, within Echvi_2643 at 3132.137 kb on - strand at 3132.137 kb on - strand, within Echvi_2643 at 3132.208 kb on - strand, within Echvi_2643 at 3132.218 kb on - strand, within Echvi_2643 at 3132.240 kb on + strand, within Echvi_2643 at 3132.241 kb on - strand, within Echvi_2643 at 3132.241 kb on - strand, within Echvi_2643 at 3132.241 kb on - strand, within Echvi_2643 at 3132.243 kb on + strand, within Echvi_2643 at 3132.243 kb on + strand, within Echvi_2643 at 3132.244 kb on - strand, within Echvi_2643 at 3132.249 kb on + strand, within Echvi_2643 at 3132.270 kb on + strand, within Echvi_2643 at 3132.271 kb on - strand, within Echvi_2643 at 3132.279 kb on + strand, within Echvi_2643 at 3132.280 kb on - strand, within Echvi_2643 at 3132.280 kb on - strand, within Echvi_2643 at 3132.351 kb on + strand, within Echvi_2643 at 3132.382 kb on + strand, within Echvi_2643 at 3132.434 kb on - strand, within Echvi_2643 at 3132.438 kb on + strand, within Echvi_2643 at 3132.438 kb on + strand, within Echvi_2643 at 3132.438 kb on + strand, within Echvi_2643 at 3132.438 kb on + strand, within Echvi_2643 at 3132.438 kb on + strand, within Echvi_2643 at 3132.438 kb on + strand, within Echvi_2643 at 3132.439 kb on - strand, within Echvi_2643 at 3132.439 kb on - strand, within Echvi_2643 at 3132.439 kb on - strand, within Echvi_2643 at 3132.446 kb on + strand, within Echvi_2643 at 3132.461 kb on + strand, within Echvi_2643 at 3132.461 kb on + strand, within Echvi_2643 at 3132.461 kb on + strand, within Echvi_2643 at 3132.467 kb on - strand, within Echvi_2643 at 3132.498 kb on + strand, within Echvi_2643 at 3132.499 kb on - strand, within Echvi_2643 at 3132.499 kb on - strand, within Echvi_2643 at 3132.552 kb on + strand, within Echvi_2643 at 3132.552 kb on + strand, within Echvi_2643 at 3132.552 kb on + strand, within Echvi_2643 at 3132.552 kb on + strand, within Echvi_2643 at 3132.553 kb on - strand, within Echvi_2643 at 3132.554 kb on + strand, within Echvi_2643 at 3132.555 kb on - strand, within Echvi_2643 at 3132.564 kb on + strand, within Echvi_2643 at 3132.564 kb on + strand, within Echvi_2643 at 3132.564 kb on + strand, within Echvi_2643 at 3132.565 kb on - strand, within Echvi_2643 at 3132.565 kb on - strand, within Echvi_2643 at 3132.592 kb on + strand, within Echvi_2643 at 3132.630 kb on + strand, within Echvi_2643 at 3132.639 kb on + strand, within Echvi_2643 at 3132.669 kb on + strand, within Echvi_2643 at 3132.677 kb on - strand, within Echvi_2643 at 3132.680 kb on - strand, within Echvi_2643 at 3132.701 kb on + strand, within Echvi_2643 at 3132.702 kb on - strand, within Echvi_2643 at 3132.739 kb on - strand, within Echvi_2643 at 3132.751 kb on + strand, within Echvi_2643 at 3132.752 kb on - strand, within Echvi_2643 at 3132.815 kb on - strand, within Echvi_2643 at 3132.829 kb on + strand, within Echvi_2643 at 3132.830 kb on - strand, within Echvi_2643 at 3132.833 kb on - strand, within Echvi_2643 at 3132.838 kb on - strand, within Echvi_2643 at 3132.838 kb on - strand, within Echvi_2643 at 3132.906 kb on + strand at 3132.946 kb on + strand at 3132.973 kb on - strand at 3133.109 kb on + strand at 3133.129 kb on + strand at 3133.130 kb on - strand at 3133.141 kb on + strand at 3133.156 kb on - strand at 3133.169 kb on - strand at 3133.217 kb on - strand at 3133.220 kb on + strand at 3133.256 kb on - strand, within Echvi_2644 at 3133.258 kb on - strand, within Echvi_2644 at 3133.304 kb on - strand, within Echvi_2644 at 3133.472 kb on - strand, within Echvi_2644 at 3133.484 kb on - strand, within Echvi_2644 at 3133.572 kb on - strand, within Echvi_2644 at 3133.572 kb on - strand, within Echvi_2644 at 3133.574 kb on + strand, within Echvi_2644 at 3133.575 kb on - strand, within Echvi_2644 at 3133.575 kb on - strand, within Echvi_2644 at 3133.608 kb on + strand, within Echvi_2644 at 3133.621 kb on - strand, within Echvi_2644 at 3133.628 kb on - strand, within Echvi_2644 at 3133.661 kb on + strand, within Echvi_2644 at 3133.705 kb on + strand at 3133.708 kb on - strand at 3133.708 kb on - strand at 3133.746 kb on - strand at 3133.816 kb on - strand at 3133.850 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM remove 3,130,885 + -3.5 3,130,885 + -0.1 3,130,886 - +1.0 3,130,918 - -0.7 3,130,960 + +1.2 3,131,288 - Echvi_2642 0.18 +2.2 3,131,364 + Echvi_2642 0.40 +0.4 3,131,364 + Echvi_2642 0.40 +1.1 3,131,364 + +1.2 3,131,364 + Echvi_2642 0.40 +0.3 3,131,365 - Echvi_2642 0.40 -2.5 3,131,365 - Echvi_2642 0.40 +1.0 3,131,367 - Echvi_2642 0.41 -0.6 3,131,367 - Echvi_2642 0.41 -1.9 3,131,393 + Echvi_2642 0.49 -1.0 3,131,394 - Echvi_2642 0.49 +0.1 3,131,397 + Echvi_2642 0.50 -0.0 3,131,397 + Echvi_2642 0.50 +1.0 3,131,398 - Echvi_2642 0.50 -0.6 3,131,398 - Echvi_2642 0.50 -1.5 3,131,399 + Echvi_2642 0.50 -0.9 3,131,399 + Echvi_2642 0.50 +1.4 3,131,399 + Echvi_2642 0.50 -1.3 3,131,399 + Echvi_2642 0.50 -0.5 3,131,399 + Echvi_2642 0.50 -0.4 3,131,399 + Echvi_2642 0.50 +0.1 3,131,400 - Echvi_2642 0.51 -0.3 3,131,422 + Echvi_2642 0.57 -0.8 3,131,423 - Echvi_2642 0.57 -1.3 3,131,460 + Echvi_2642 0.68 -0.4 3,131,491 + Echvi_2642 0.77 +0.4 3,131,491 + Echvi_2642 0.77 +0.5 3,131,491 + Echvi_2642 0.77 +0.4 3,131,491 + Echvi_2642 0.77 +0.2 3,131,492 - Echvi_2642 0.77 -1.5 3,131,522 - Echvi_2642 0.86 +0.6 3,131,546 - +0.3 3,131,574 - -2.0 3,131,609 + -0.2 3,131,638 + -0.4 3,131,639 - -0.3 3,131,663 + -0.7 3,131,664 - +0.2 3,131,718 + -0.7 3,131,768 - +0.4 3,131,815 + -0.1 3,131,815 + -1.2 3,131,817 + -1.5 3,131,817 + -1.4 3,131,821 + -1.5 3,131,821 + -1.1 3,131,823 + -0.7 3,131,829 + +0.6 3,131,938 - +0.2 3,131,938 - -0.1 3,131,954 - +0.3 3,131,980 - Echvi_2643 0.11 -0.4 3,131,986 - Echvi_2643 0.12 +0.5 3,131,991 + Echvi_2643 0.12 -1.6 3,132,004 + Echvi_2643 0.13 -1.3 3,132,067 + Echvi_2643 0.19 +0.0 3,132,111 + Echvi_2643 0.23 -0.3 3,132,136 + Echvi_2643 0.25 +1.7 3,132,136 + Echvi_2643 0.25 -1.1 3,132,136 + Echvi_2643 0.25 -0.3 3,132,137 - -0.1 3,132,137 - Echvi_2643 0.25 -0.2 3,132,208 - Echvi_2643 0.31 -1.0 3,132,218 - Echvi_2643 0.32 -0.4 3,132,240 + Echvi_2643 0.34 -1.6 3,132,241 - Echvi_2643 0.34 -0.8 3,132,241 - Echvi_2643 0.34 -0.5 3,132,241 - Echvi_2643 0.34 -0.6 3,132,243 + Echvi_2643 0.34 -0.7 3,132,243 + Echvi_2643 0.34 -3.1 3,132,244 - Echvi_2643 0.34 +0.6 3,132,249 + Echvi_2643 0.34 -0.4 3,132,270 + Echvi_2643 0.36 -2.3 3,132,271 - Echvi_2643 0.36 -0.6 3,132,279 + Echvi_2643 0.37 -1.4 3,132,280 - Echvi_2643 0.37 -1.5 3,132,280 - Echvi_2643 0.37 -0.7 3,132,351 + Echvi_2643 0.43 -0.6 3,132,382 + Echvi_2643 0.46 -0.6 3,132,434 - Echvi_2643 0.50 -2.3 3,132,438 + Echvi_2643 0.51 -0.1 3,132,438 + Echvi_2643 0.51 +0.8 3,132,438 + Echvi_2643 0.51 -0.4 3,132,438 + Echvi_2643 0.51 -0.0 3,132,438 + Echvi_2643 0.51 +0.4 3,132,438 + Echvi_2643 0.51 -1.1 3,132,439 - Echvi_2643 0.51 -0.7 3,132,439 - Echvi_2643 0.51 -0.2 3,132,439 - Echvi_2643 0.51 +1.2 3,132,446 + Echvi_2643 0.52 -0.4 3,132,461 + Echvi_2643 0.53 -0.4 3,132,461 + Echvi_2643 0.53 -0.1 3,132,461 + Echvi_2643 0.53 -0.9 3,132,467 - Echvi_2643 0.53 -0.1 3,132,498 + Echvi_2643 0.56 -0.7 3,132,499 - Echvi_2643 0.56 -1.0 3,132,499 - Echvi_2643 0.56 -0.4 3,132,552 + Echvi_2643 0.61 +0.3 3,132,552 + Echvi_2643 0.61 +0.6 3,132,552 + Echvi_2643 0.61 -1.1 3,132,552 + Echvi_2643 0.61 +0.6 3,132,553 - Echvi_2643 0.61 +0.1 3,132,554 + Echvi_2643 0.61 +0.4 3,132,555 - Echvi_2643 0.61 +0.3 3,132,564 + Echvi_2643 0.62 -0.7 3,132,564 + Echvi_2643 0.62 -0.3 3,132,564 + Echvi_2643 0.62 -0.9 3,132,565 - Echvi_2643 0.62 +0.7 3,132,565 - Echvi_2643 0.62 -0.6 3,132,592 + Echvi_2643 0.64 +0.3 3,132,630 + Echvi_2643 0.67 -1.8 3,132,639 + Echvi_2643 0.68 -0.6 3,132,669 + Echvi_2643 0.71 -0.3 3,132,677 - Echvi_2643 0.72 +0.4 3,132,680 - Echvi_2643 0.72 -1.1 3,132,701 + Echvi_2643 0.74 -1.9 3,132,702 - Echvi_2643 0.74 +0.4 3,132,739 - Echvi_2643 0.77 -1.1 3,132,751 + Echvi_2643 0.78 -0.4 3,132,752 - Echvi_2643 0.78 +0.2 3,132,815 - Echvi_2643 0.83 -0.2 3,132,829 + Echvi_2643 0.85 +0.1 3,132,830 - Echvi_2643 0.85 -1.1 3,132,833 - Echvi_2643 0.85 +1.7 3,132,838 - Echvi_2643 0.85 +0.3 3,132,838 - Echvi_2643 0.85 -0.7 3,132,906 + -3.1 3,132,946 + -0.6 3,132,973 - +0.2 3,133,109 + -0.9 3,133,129 + -0.9 3,133,130 - +0.9 3,133,141 + -1.4 3,133,156 - -1.3 3,133,169 - -0.0 3,133,217 - +0.1 3,133,220 + +2.6 3,133,256 - Echvi_2644 0.14 +0.8 3,133,258 - Echvi_2644 0.15 -0.1 3,133,304 - Echvi_2644 0.23 +1.8 3,133,472 - Echvi_2644 0.52 -1.4 3,133,484 - Echvi_2644 0.54 +0.1 3,133,572 - Echvi_2644 0.70 -1.0 3,133,572 - Echvi_2644 0.70 +0.1 3,133,574 + Echvi_2644 0.70 -1.4 3,133,575 - Echvi_2644 0.70 -0.5 3,133,575 - Echvi_2644 0.70 -0.9 3,133,608 + Echvi_2644 0.76 -0.9 3,133,621 - Echvi_2644 0.78 +0.3 3,133,628 - Echvi_2644 0.79 -0.9 3,133,661 + Echvi_2644 0.85 -2.7 3,133,705 + -0.4 3,133,708 - -1.2 3,133,708 - -0.0 3,133,746 - +0.3 3,133,816 - +1.1 3,133,850 - -1.5
Or see this region's nucleotide sequence