Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1806

Experiment: m.b. Lomefloxacin 0.025 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_1805 and Echvi_1806 are separated by 63 nucleotidesEchvi_1806 and Echvi_1807 are separated by 356 nucleotides Echvi_1805: Echvi_1805 - DNA segregation ATPase FtsK/SpoIIIE and related proteins, at 2,121,062 to 2,123,539 _1805 Echvi_1806: Echvi_1806 - dihydroorotate dehydrogenase, subfamily 2, at 2,123,603 to 2,124,649 _1806 Echvi_1807: Echvi_1807 - hypothetical protein, at 2,125,006 to 2,127,384 _1807 Position (kb) 2123 2124 2125Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2123.564 kb on - strandat 2123.567 kb on - strandat 2123.571 kb on - strandat 2123.596 kb on + strandat 2123.616 kb on + strandat 2124.706 kb on + strandat 2124.756 kb on - strandat 2124.774 kb on + strandat 2124.774 kb on + strandat 2124.779 kb on - strandat 2124.830 kb on - strandat 2124.832 kb on + strandat 2124.833 kb on - strandat 2124.849 kb on - strandat 2124.866 kb on + strandat 2124.882 kb on - strandat 2124.884 kb on + strandat 2124.884 kb on + strandat 2124.885 kb on - strandat 2124.931 kb on - strandat 2124.931 kb on - strandat 2124.933 kb on + strandat 2124.933 kb on + strandat 2124.942 kb on + strandat 2124.942 kb on + strandat 2124.943 kb on - strandat 2124.944 kb on + strandat 2124.944 kb on + strandat 2124.945 kb on - strandat 2124.948 kb on + strandat 2124.948 kb on + strandat 2124.949 kb on - strandat 2125.002 kb on - strandat 2125.002 kb on - strandat 2125.215 kb on + strandat 2125.215 kb on + strandat 2125.216 kb on - strandat 2125.216 kb on - strandat 2125.257 kb on + strand, within Echvi_1807at 2125.258 kb on - strand, within Echvi_1807at 2125.258 kb on - strand, within Echvi_1807at 2125.354 kb on + strand, within Echvi_1807at 2125.356 kb on + strand, within Echvi_1807at 2125.357 kb on - strand, within Echvi_1807at 2125.357 kb on - strand, within Echvi_1807at 2125.445 kb on + strand, within Echvi_1807at 2125.446 kb on - strand, within Echvi_1807at 2125.446 kb on - strand, within Echvi_1807at 2125.466 kb on + strand, within Echvi_1807at 2125.498 kb on + strand, within Echvi_1807at 2125.498 kb on + strand, within Echvi_1807at 2125.499 kb on - strand, within Echvi_1807at 2125.558 kb on - strand, within Echvi_1807at 2125.558 kb on - strand, within Echvi_1807at 2125.631 kb on + strand, within Echvi_1807at 2125.632 kb on - strand, within Echvi_1807at 2125.632 kb on - strand, within Echvi_1807

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM
remove
2,123,564 - -0.0
2,123,567 - -0.6
2,123,571 - +0.8
2,123,596 + -0.8
2,123,616 + -1.4
2,124,706 + -0.7
2,124,756 - +0.5
2,124,774 + +0.5
2,124,774 + -0.0
2,124,779 - +1.2
2,124,830 - -0.2
2,124,832 + +0.8
2,124,833 - +0.1
2,124,849 - -0.8
2,124,866 + -0.8
2,124,882 - +1.0
2,124,884 + +0.7
2,124,884 + -1.1
2,124,885 - -0.2
2,124,931 - -0.6
2,124,931 - +0.1
2,124,933 + -0.5
2,124,933 + -0.3
2,124,942 + -0.2
2,124,942 + -0.4
2,124,943 - -1.8
2,124,944 + -1.6
2,124,944 + +0.2
2,124,945 - -1.2
2,124,948 + -0.3
2,124,948 + -2.8
2,124,949 - -0.5
2,125,002 - -2.6
2,125,002 - -0.5
2,125,215 + +0.1
2,125,215 + -0.3
2,125,216 - -0.9
2,125,216 - +0.6
2,125,257 + Echvi_1807 0.11 -2.0
2,125,258 - Echvi_1807 0.11 -1.3
2,125,258 - Echvi_1807 0.11 -0.5
2,125,354 + Echvi_1807 0.15 +0.3
2,125,356 + Echvi_1807 0.15 -0.2
2,125,357 - Echvi_1807 0.15 -0.5
2,125,357 - Echvi_1807 0.15 -1.1
2,125,445 + Echvi_1807 0.18 -0.4
2,125,446 - Echvi_1807 0.18 +0.5
2,125,446 - Echvi_1807 0.18 +1.8
2,125,466 + Echvi_1807 0.19 -0.5
2,125,498 + Echvi_1807 0.21 -0.0
2,125,498 + Echvi_1807 0.21 +1.8
2,125,499 - Echvi_1807 0.21 -1.4
2,125,558 - Echvi_1807 0.23 -0.2
2,125,558 - Echvi_1807 0.23 +0.3
2,125,631 + Echvi_1807 0.26 -1.0
2,125,632 - Echvi_1807 0.26 -1.5
2,125,632 - Echvi_1807 0.26 +0.1

Or see this region's nucleotide sequence