Experiment: m.b. Lomefloxacin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1741 and Echvi_1742 overlap by 4 nucleotides Echvi_1742 and Echvi_1743 overlap by 4 nucleotides Echvi_1743 and Echvi_1744 overlap by 1 nucleotides Echvi_1744 and Echvi_1745 are separated by 1 nucleotides
Echvi_1741: Echvi_1741 - DNA polymerase III, gamma/tau subunits, at 2,051,494 to 2,052,636
_1741
Echvi_1742: Echvi_1742 - Uncharacterized protein conserved in archaea, at 2,052,633 to 2,053,076
_1742
Echvi_1743: Echvi_1743 - alpha-L-glutamate ligases, RimK family, at 2,053,073 to 2,053,981
_1743
Echvi_1744: Echvi_1744 - porphobilinogen deaminase, at 2,053,981 to 2,054,916
_1744
Echvi_1745: Echvi_1745 - Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family, at 2,054,918 to 2,055,763
_1745
Position (kb)
2053
2054 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5 at 2052.611 kb on + strand at 2052.989 kb on - strand, within Echvi_1742 at 2053.022 kb on - strand, within Echvi_1742 at 2053.031 kb on - strand, within Echvi_1742 at 2053.031 kb on - strand, within Echvi_1742 at 2053.067 kb on + strand at 2053.067 kb on + strand at 2053.086 kb on + strand at 2053.109 kb on + strand at 2053.220 kb on + strand, within Echvi_1743 at 2053.286 kb on + strand, within Echvi_1743 at 2053.286 kb on + strand, within Echvi_1743 at 2053.500 kb on + strand, within Echvi_1743 at 2053.597 kb on + strand, within Echvi_1743 at 2053.765 kb on + strand, within Echvi_1743 at 2053.765 kb on + strand, within Echvi_1743 at 2053.765 kb on + strand, within Echvi_1743 at 2053.819 kb on + strand, within Echvi_1743 at 2054.895 kb on + strand at 2054.907 kb on + strand at 2054.907 kb on + strand at 2054.907 kb on + strand at 2054.915 kb on - strand at 2054.927 kb on + strand at 2054.927 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM remove 2,052,611 + +2.5 2,052,989 - Echvi_1742 0.80 -1.1 2,053,022 - Echvi_1742 0.88 -1.7 2,053,031 - Echvi_1742 0.90 -0.2 2,053,031 - Echvi_1742 0.90 +1.5 2,053,067 + +2.3 2,053,067 + +2.0 2,053,086 + +2.4 2,053,109 + +2.6 2,053,220 + Echvi_1743 0.16 +3.2 2,053,286 + Echvi_1743 0.23 +2.0 2,053,286 + Echvi_1743 0.23 +1.3 2,053,500 + Echvi_1743 0.47 +2.6 2,053,597 + Echvi_1743 0.58 +3.0 2,053,765 + Echvi_1743 0.76 +2.5 2,053,765 + Echvi_1743 0.76 +3.3 2,053,765 + Echvi_1743 0.76 +4.8 2,053,819 + Echvi_1743 0.82 +1.5 2,054,895 + +3.3 2,054,907 + +2.7 2,054,907 + +2.2 2,054,907 + +2.4 2,054,915 - +1.4 2,054,927 + +2.4 2,054,927 + +3.5
Or see this region's nucleotide sequence