Experiment: m.b. Lomefloxacin 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1462 and Echvi_1463 are separated by 110 nucleotides Echvi_1463 and Echvi_1464 are separated by 3 nucleotides
Echvi_1462: Echvi_1462 - hypothetical protein, at 1,674,871 to 1,675,932
_1462
Echvi_1463: Echvi_1463 - Arylsulfatase A and related enzymes, at 1,676,043 to 1,677,455
_1463
Echvi_1464: Echvi_1464 - rod shape-determining protein RodA, at 1,677,459 to 1,678,763
_1464
Position (kb)
1676
1677
1678 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1675.097 kb on + strand, within Echvi_1462 at 1675.097 kb on + strand, within Echvi_1462 at 1675.098 kb on - strand, within Echvi_1462 at 1675.217 kb on + strand, within Echvi_1462 at 1675.301 kb on - strand, within Echvi_1462 at 1675.393 kb on + strand, within Echvi_1462 at 1675.394 kb on - strand, within Echvi_1462 at 1675.479 kb on + strand, within Echvi_1462 at 1675.479 kb on + strand, within Echvi_1462 at 1675.539 kb on + strand, within Echvi_1462 at 1675.539 kb on + strand, within Echvi_1462 at 1675.540 kb on - strand, within Echvi_1462 at 1675.734 kb on + strand, within Echvi_1462 at 1675.735 kb on - strand, within Echvi_1462 at 1675.735 kb on - strand, within Echvi_1462 at 1675.827 kb on - strand at 1675.930 kb on + strand at 1675.933 kb on + strand at 1675.934 kb on - strand at 1675.939 kb on - strand at 1675.939 kb on - strand at 1675.939 kb on - strand at 1675.948 kb on - strand at 1676.019 kb on + strand at 1676.019 kb on + strand at 1676.026 kb on + strand at 1676.027 kb on - strand at 1676.027 kb on - strand at 1676.032 kb on - strand at 1676.065 kb on + strand at 1676.080 kb on + strand at 1676.086 kb on + strand at 1676.086 kb on + strand at 1676.087 kb on - strand at 1676.160 kb on - strand at 1676.165 kb on - strand at 1676.176 kb on + strand at 1676.176 kb on + strand at 1676.176 kb on + strand at 1676.177 kb on - strand at 1676.181 kb on + strand at 1676.229 kb on - strand, within Echvi_1463 at 1676.271 kb on + strand, within Echvi_1463 at 1676.271 kb on + strand, within Echvi_1463 at 1676.271 kb on + strand, within Echvi_1463 at 1676.271 kb on + strand, within Echvi_1463 at 1676.271 kb on + strand at 1676.272 kb on - strand, within Echvi_1463 at 1676.291 kb on + strand, within Echvi_1463 at 1676.291 kb on + strand, within Echvi_1463 at 1676.343 kb on + strand, within Echvi_1463 at 1676.363 kb on + strand, within Echvi_1463 at 1676.411 kb on + strand, within Echvi_1463 at 1676.411 kb on + strand, within Echvi_1463 at 1676.412 kb on - strand, within Echvi_1463 at 1676.445 kb on + strand, within Echvi_1463 at 1676.477 kb on - strand, within Echvi_1463 at 1676.503 kb on + strand, within Echvi_1463 at 1676.503 kb on + strand, within Echvi_1463 at 1676.532 kb on + strand, within Echvi_1463 at 1676.573 kb on + strand, within Echvi_1463 at 1676.574 kb on - strand, within Echvi_1463 at 1676.585 kb on + strand, within Echvi_1463 at 1676.586 kb on - strand, within Echvi_1463 at 1676.598 kb on - strand, within Echvi_1463 at 1676.610 kb on - strand, within Echvi_1463 at 1676.631 kb on + strand, within Echvi_1463 at 1676.632 kb on - strand, within Echvi_1463 at 1676.632 kb on - strand, within Echvi_1463 at 1676.636 kb on + strand, within Echvi_1463 at 1676.660 kb on + strand, within Echvi_1463 at 1676.661 kb on - strand, within Echvi_1463 at 1676.661 kb on - strand, within Echvi_1463 at 1676.661 kb on - strand, within Echvi_1463 at 1676.681 kb on + strand, within Echvi_1463 at 1676.703 kb on + strand, within Echvi_1463 at 1676.703 kb on + strand, within Echvi_1463 at 1676.704 kb on - strand, within Echvi_1463 at 1676.704 kb on - strand, within Echvi_1463 at 1676.763 kb on + strand, within Echvi_1463 at 1676.763 kb on + strand, within Echvi_1463 at 1676.764 kb on - strand, within Echvi_1463 at 1676.764 kb on - strand, within Echvi_1463 at 1676.764 kb on - strand, within Echvi_1463 at 1676.764 kb on - strand, within Echvi_1463 at 1676.764 kb on - strand, within Echvi_1463 at 1676.764 kb on - strand, within Echvi_1463 at 1676.764 kb on - strand, within Echvi_1463 at 1676.771 kb on + strand, within Echvi_1463 at 1676.772 kb on - strand, within Echvi_1463 at 1676.772 kb on - strand, within Echvi_1463 at 1676.796 kb on + strand, within Echvi_1463 at 1676.796 kb on + strand, within Echvi_1463 at 1676.797 kb on - strand, within Echvi_1463 at 1676.797 kb on - strand, within Echvi_1463 at 1676.797 kb on - strand, within Echvi_1463 at 1676.797 kb on - strand, within Echvi_1463 at 1676.824 kb on + strand, within Echvi_1463 at 1676.824 kb on + strand, within Echvi_1463 at 1676.825 kb on - strand, within Echvi_1463 at 1676.825 kb on - strand, within Echvi_1463 at 1676.825 kb on - strand, within Echvi_1463 at 1676.825 kb on - strand, within Echvi_1463 at 1676.880 kb on - strand, within Echvi_1463 at 1676.892 kb on - strand, within Echvi_1463 at 1676.943 kb on + strand, within Echvi_1463 at 1676.943 kb on + strand, within Echvi_1463 at 1676.943 kb on + strand, within Echvi_1463 at 1676.944 kb on - strand, within Echvi_1463 at 1676.944 kb on - strand, within Echvi_1463 at 1676.944 kb on - strand, within Echvi_1463 at 1676.944 kb on - strand, within Echvi_1463 at 1676.945 kb on + strand, within Echvi_1463 at 1676.945 kb on + strand, within Echvi_1463 at 1676.945 kb on + strand, within Echvi_1463 at 1676.946 kb on - strand, within Echvi_1463 at 1676.946 kb on - strand, within Echvi_1463 at 1676.946 kb on - strand, within Echvi_1463 at 1676.946 kb on - strand, within Echvi_1463 at 1676.951 kb on + strand, within Echvi_1463 at 1677.069 kb on - strand, within Echvi_1463 at 1677.130 kb on + strand, within Echvi_1463 at 1677.138 kb on + strand, within Echvi_1463 at 1677.139 kb on - strand, within Echvi_1463 at 1677.259 kb on + strand, within Echvi_1463 at 1677.260 kb on - strand, within Echvi_1463 at 1677.291 kb on + strand, within Echvi_1463 at 1677.291 kb on + strand, within Echvi_1463 at 1677.292 kb on - strand, within Echvi_1463 at 1677.292 kb on - strand, within Echvi_1463 at 1677.298 kb on + strand, within Echvi_1463 at 1677.298 kb on + strand, within Echvi_1463 at 1677.313 kb on + strand, within Echvi_1463 at 1677.359 kb on + strand at 1677.359 kb on + strand at 1677.359 kb on + strand at 1677.359 kb on + strand at 1677.359 kb on + strand at 1677.360 kb on - strand at 1677.360 kb on - strand at 1677.360 kb on - strand at 1677.360 kb on - strand at 1677.401 kb on + strand at 1677.401 kb on + strand at 1677.402 kb on - strand at 1677.402 kb on - strand at 1677.406 kb on + strand at 1677.406 kb on + strand at 1677.407 kb on - strand at 1677.407 kb on - strand at 1677.412 kb on + strand at 1677.412 kb on + strand at 1677.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Lomefloxacin 0.025 mM remove 1,675,097 + Echvi_1462 0.21 +0.2 1,675,097 + Echvi_1462 0.21 -0.9 1,675,098 - Echvi_1462 0.21 -0.4 1,675,217 + Echvi_1462 0.33 -0.3 1,675,301 - Echvi_1462 0.40 -2.2 1,675,393 + Echvi_1462 0.49 +0.6 1,675,394 - Echvi_1462 0.49 +0.9 1,675,479 + Echvi_1462 0.57 -1.3 1,675,479 + Echvi_1462 0.57 -0.6 1,675,539 + Echvi_1462 0.63 -0.9 1,675,539 + Echvi_1462 0.63 +0.6 1,675,540 - Echvi_1462 0.63 +1.1 1,675,734 + Echvi_1462 0.81 +0.6 1,675,735 - Echvi_1462 0.81 -1.5 1,675,735 - Echvi_1462 0.81 +1.2 1,675,827 - +0.6 1,675,930 + +0.8 1,675,933 + -1.1 1,675,934 - +2.0 1,675,939 - +0.3 1,675,939 - +0.5 1,675,939 - -1.2 1,675,948 - -0.9 1,676,019 + -0.9 1,676,019 + +0.7 1,676,026 + +0.3 1,676,027 - -0.6 1,676,027 - +1.2 1,676,032 - +0.5 1,676,065 + -0.8 1,676,080 + -2.0 1,676,086 + -0.5 1,676,086 + -1.3 1,676,087 - -0.4 1,676,160 - -0.6 1,676,165 - +1.1 1,676,176 + -0.6 1,676,176 + -1.2 1,676,176 + +0.7 1,676,177 - -0.0 1,676,181 + -0.2 1,676,229 - Echvi_1463 0.13 -0.6 1,676,271 + Echvi_1463 0.16 +0.6 1,676,271 + Echvi_1463 0.16 -0.1 1,676,271 + Echvi_1463 0.16 -0.3 1,676,271 + Echvi_1463 0.16 +3.1 1,676,271 + +0.7 1,676,272 - Echvi_1463 0.16 +0.5 1,676,291 + Echvi_1463 0.18 +1.1 1,676,291 + Echvi_1463 0.18 +1.7 1,676,343 + Echvi_1463 0.21 +0.2 1,676,363 + Echvi_1463 0.23 +0.2 1,676,411 + Echvi_1463 0.26 +0.6 1,676,411 + Echvi_1463 0.26 +0.9 1,676,412 - Echvi_1463 0.26 -2.0 1,676,445 + Echvi_1463 0.28 -0.3 1,676,477 - Echvi_1463 0.31 +0.0 1,676,503 + Echvi_1463 0.33 +0.6 1,676,503 + Echvi_1463 0.33 +0.7 1,676,532 + Echvi_1463 0.35 +1.0 1,676,573 + Echvi_1463 0.38 +0.3 1,676,574 - Echvi_1463 0.38 -0.8 1,676,585 + Echvi_1463 0.38 +0.1 1,676,586 - Echvi_1463 0.38 -0.5 1,676,598 - Echvi_1463 0.39 -0.4 1,676,610 - Echvi_1463 0.40 -1.6 1,676,631 + Echvi_1463 0.42 +0.9 1,676,632 - Echvi_1463 0.42 -1.3 1,676,632 - Echvi_1463 0.42 -1.0 1,676,636 + Echvi_1463 0.42 +1.5 1,676,660 + Echvi_1463 0.44 +1.2 1,676,661 - Echvi_1463 0.44 -0.5 1,676,661 - Echvi_1463 0.44 +0.5 1,676,661 - Echvi_1463 0.44 -1.4 1,676,681 + Echvi_1463 0.45 -0.4 1,676,703 + Echvi_1463 0.47 +0.7 1,676,703 + Echvi_1463 0.47 +0.5 1,676,704 - Echvi_1463 0.47 -0.7 1,676,704 - Echvi_1463 0.47 +1.6 1,676,763 + Echvi_1463 0.51 +1.6 1,676,763 + Echvi_1463 0.51 +1.6 1,676,764 - Echvi_1463 0.51 +0.5 1,676,764 - Echvi_1463 0.51 +0.5 1,676,764 - Echvi_1463 0.51 -0.2 1,676,764 - Echvi_1463 0.51 -0.2 1,676,764 - Echvi_1463 0.51 -0.9 1,676,764 - Echvi_1463 0.51 -0.1 1,676,764 - Echvi_1463 0.51 +1.0 1,676,771 + Echvi_1463 0.52 +0.9 1,676,772 - Echvi_1463 0.52 -0.3 1,676,772 - Echvi_1463 0.52 -1.4 1,676,796 + Echvi_1463 0.53 +0.5 1,676,796 + Echvi_1463 0.53 +2.2 1,676,797 - Echvi_1463 0.53 -1.5 1,676,797 - Echvi_1463 0.53 +1.0 1,676,797 - Echvi_1463 0.53 -0.6 1,676,797 - Echvi_1463 0.53 +0.1 1,676,824 + Echvi_1463 0.55 +1.0 1,676,824 + Echvi_1463 0.55 +0.2 1,676,825 - Echvi_1463 0.55 -0.3 1,676,825 - Echvi_1463 0.55 +0.1 1,676,825 - Echvi_1463 0.55 +0.9 1,676,825 - Echvi_1463 0.55 -2.3 1,676,880 - Echvi_1463 0.59 -0.2 1,676,892 - Echvi_1463 0.60 -2.3 1,676,943 + Echvi_1463 0.64 +0.6 1,676,943 + Echvi_1463 0.64 +0.8 1,676,943 + Echvi_1463 0.64 +0.4 1,676,944 - Echvi_1463 0.64 -0.0 1,676,944 - Echvi_1463 0.64 +0.8 1,676,944 - Echvi_1463 0.64 -1.8 1,676,944 - Echvi_1463 0.64 +0.6 1,676,945 + Echvi_1463 0.64 +1.3 1,676,945 + Echvi_1463 0.64 +0.3 1,676,945 + Echvi_1463 0.64 +0.0 1,676,946 - Echvi_1463 0.64 -0.6 1,676,946 - Echvi_1463 0.64 +0.3 1,676,946 - Echvi_1463 0.64 +0.9 1,676,946 - Echvi_1463 0.64 +0.5 1,676,951 + Echvi_1463 0.64 -0.0 1,677,069 - Echvi_1463 0.73 +0.4 1,677,130 + Echvi_1463 0.77 -0.6 1,677,138 + Echvi_1463 0.77 +1.1 1,677,139 - Echvi_1463 0.78 -0.6 1,677,259 + Echvi_1463 0.86 +0.4 1,677,260 - Echvi_1463 0.86 -0.3 1,677,291 + Echvi_1463 0.88 -1.0 1,677,291 + Echvi_1463 0.88 +0.4 1,677,292 - Echvi_1463 0.88 +1.4 1,677,292 - Echvi_1463 0.88 -0.8 1,677,298 + Echvi_1463 0.89 +0.5 1,677,298 + Echvi_1463 0.89 +1.7 1,677,313 + Echvi_1463 0.90 -1.3 1,677,359 + +0.9 1,677,359 + -1.3 1,677,359 + +0.3 1,677,359 + +1.2 1,677,359 + +1.3 1,677,360 - +2.4 1,677,360 - +0.4 1,677,360 - -0.7 1,677,360 - -0.2 1,677,401 + +0.2 1,677,401 + +0.4 1,677,402 - +0.2 1,677,402 - +0.5 1,677,406 + +1.1 1,677,406 + -0.3 1,677,407 - +1.7 1,677,407 - -0.5 1,677,412 + +1.1 1,677,412 + +0.5 1,677,413 - +0.0
Or see this region's nucleotide sequence